Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13e22
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   0.65 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   1.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   1.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   1.5  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   2.6  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.0  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   8.0  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   8.0  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 0.65
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 323 ITTKVPPTSHTGMPSSLVSTGTP 255
           IT + PP  HT      VS GTP
Sbjct: 608 ITIQEPPQWHTRSTEKRVSAGTP 630


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 9   KLLEEPLVSSHFCTSLQ 59
           K+L EPLV  HF  +L+
Sbjct: 685 KILAEPLVKEHFKKALE 701


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 10  SFWKNHLFLPTFVPLFKTYSRVETQLLTF 96
           SF +   FL     +FK  S++E + +TF
Sbjct: 401 SFLERERFLGIINNIFKNMSQIEREAITF 429


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 10  SFWKNHLFLPTFVPLFKTYSRVETQLLTF 96
           SF +   FL     +FK  S++E + +TF
Sbjct: 401 SFLERERFLGIINNIFKNMSQIEREAITF 429


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 348 PRTGHLGPALLYP 386
           PR  H+GP+ L+P
Sbjct: 139 PRFRHIGPSTLFP 151


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 189 KVVNYNHLMPTRYTVDFSFEKFSAKDLKDPA 97
           K++ YN    ++Y +  S  +  +  +KDPA
Sbjct: 387 KILGYNLEAASKYQIVPSALEIFSTSMKDPA 417


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 189 KVVNYNHLMPTRYTVDFSFEKFSAKDLKDPA 97
           K++ YN    ++Y +  S  +  +  +KDPA
Sbjct: 387 KILGYNLEAASKYQIVPSALEIFSTSMKDPA 417


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -1

Query: 57  EERYKSGKKQVV 22
           +E YKSGK+ ++
Sbjct: 263 KEEYKSGKRNII 274


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 192 VKVVNYNHLMPTRYTV 145
           V V+N++H  P RY +
Sbjct: 344 VLVLNFHHRTPDRYVM 359


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 192 VKVVNYNHLMPTRYTV 145
           V V+N++H  P RY +
Sbjct: 344 VLVLNFHHRTPDRYVM 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,250
Number of Sequences: 438
Number of extensions: 3077
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)