Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13e18
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81544-3|CAB04435.1|  255|Caenorhabditis elegans Hypothetical pr...    31   0.93 
AL032626-21|CAD45606.2|  433|Caenorhabditis elegans Hypothetical...    30   1.6  
AL032626-20|CAD45605.1|  445|Caenorhabditis elegans Hypothetical...    30   1.6  
AL032626-19|CAA21537.1|  508|Caenorhabditis elegans Hypothetical...    30   1.6  
AF109378-1|AAD19958.1|  508|Caenorhabditis elegans glutamic acid...    30   1.6  
U29382-1|AAG00006.1|  382|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z75547-11|CAA99905.4|  394|Caenorhabditis elegans Hypothetical p...    28   6.6  
AF106573-1|AAC78152.2|  336|Caenorhabditis elegans Hypothetical ...    28   6.6  
AC024836-1|AAK39347.2|  475|Caenorhabditis elegans Hypothetical ...    28   6.6  
AC006769-11|AAF60586.1|  340|Caenorhabditis elegans Seven tm rec...    28   6.6  
AC006645-4|AAF39845.2|  340|Caenorhabditis elegans Seven tm rece...    28   6.6  
U28943-2|AAA68357.1|  613|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>Z81544-3|CAB04435.1|  255|Caenorhabditis elegans Hypothetical
           protein F49C5.7 protein.
          Length = 255

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 21/84 (25%), Positives = 38/84 (45%)
 Frame = -2

Query: 782 VGGKAMTFLLCFNLETSTMVKILSLKRIFCIFQYRKQPARYVINLPHEEIDNLYNKLNWE 603
           V G A+ F    +LET    K+L+ K I    + R +   +V    H  ++  +   N E
Sbjct: 138 VTGHALAFRYRSDLETRDYSKVLTFKPIVFFEKGRGEKDPHVYLENHRGLNVFFVWYNNE 197

Query: 602 RTRRLMKGDVPSNCATVNRSSLKY 531
           ++  ++  + P+NCA      L +
Sbjct: 198 KSGVILDANEPNNCANDQADCLPF 221


>AL032626-21|CAD45606.2|  433|Caenorhabditis elegans Hypothetical
           protein Y37D8A.23c protein.
          Length = 433

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 608 WERTRRLMKGDVPSNCATVNRSSLKYIKQAQSLLGI-PDY 492
           W R++ L   D+P+ C   +  S   IK A ++LGI  DY
Sbjct: 108 WPRSKHLGMKDIPTLCCFTSEDSHYSIKSASAVLGIGADY 147


>AL032626-20|CAD45605.1|  445|Caenorhabditis elegans Hypothetical
           protein Y37D8A.23b protein.
          Length = 445

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 608 WERTRRLMKGDVPSNCATVNRSSLKYIKQAQSLLGI-PDY 492
           W R++ L   D+P+ C   +  S   IK A ++LGI  DY
Sbjct: 183 WPRSKHLGMKDIPTLCCFTSEDSHYSIKSASAVLGIGADY 222


>AL032626-19|CAA21537.1|  508|Caenorhabditis elegans Hypothetical
           protein Y37D8A.23a protein.
          Length = 508

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 608 WERTRRLMKGDVPSNCATVNRSSLKYIKQAQSLLGI-PDY 492
           W R++ L   D+P+ C   +  S   IK A ++LGI  DY
Sbjct: 183 WPRSKHLGMKDIPTLCCFTSEDSHYSIKSASAVLGIGADY 222


>AF109378-1|AAD19958.1|  508|Caenorhabditis elegans glutamic acid
           decarboxylase protein.
          Length = 508

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 608 WERTRRLMKGDVPSNCATVNRSSLKYIKQAQSLLGI-PDY 492
           W R++ L   D+P+ C   +  S   IK A ++LGI  DY
Sbjct: 183 WPRSKHLGMKDIPTLCCFTSEDSHYSIKSASAVLGIGADY 222


>U29382-1|AAG00006.1|  382|Caenorhabditis elegans Hypothetical
           protein R03H10.2 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 324 AVVFAKQPNFFVGLCFIWRNRHYLVKVVQFYD-YVGHQLIGENYFLEHFDKVHNRLAIVG 500
           A+  A   +  V LC++W+++     +V F D  +    I E  FL  +      L ++G
Sbjct: 49  ALALAVAISSLVLLCYVWKDKQVYDHIVDFLDKTIQISKIAERPFLGVYQLSEKELEVLG 108

Query: 501 N 503
           N
Sbjct: 109 N 109


>Z75547-11|CAA99905.4|  394|Caenorhabditis elegans Hypothetical
           protein R11D1.10a protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 605 PNSICCTNYQFPRAAD*LHSARAVCDIERCKKCV 706
           P+SICCTN +   +     +  + C +  CKKC+
Sbjct: 2   PSSICCTNCRTKYSLLNREAGCSNCALSFCKKCL 35


>AF106573-1|AAC78152.2|  336|Caenorhabditis elegans Hypothetical
           protein F52D2.1 protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -2

Query: 566 NCATVNRSSLKYIKQAQSLLGIPDYSQTVVDFVKMFQKIIFPYQLVPNVIIKLNNF 399
           N   V    LK++ +  S LGI +Y++   + +K F   + P +  P   +++ NF
Sbjct: 122 NFMDVGFKDLKFLLKHVSTLGIYNYAKNRKEIIKSFIDFLKPEECFPVDAVEIWNF 177


>AC024836-1|AAK39347.2|  475|Caenorhabditis elegans Hypothetical
           protein Y59E1A.1 protein.
          Length = 475

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -2

Query: 566 NCATVNRSSLKYIKQAQSLLGIPDYSQTVVDFVKMFQKIIFPYQLVPNVIIKLNNF 399
           N   V    LK++ +  S LGI +Y++   + +K F   + P +  P   +++ NF
Sbjct: 122 NFMDVGFKDLKFLLKHVSTLGIYNYAKNRKEIIKSFIDFLKPEECFPVDAVEIWNF 177


>AC006769-11|AAF60586.1|  340|Caenorhabditis elegans Seven tm
           receptor protein 154 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -2

Query: 464 MFQKIIFPYQLVPNVIIKLNNFDQIMSVAPNKAESYKKIRLFCKNDSIAISS 309
           + + I  P   V +V++       +++ +P K  SYK + ++C   SIA ++
Sbjct: 6   LIKSITQPIAAVLSVVVNFILITLVVTSSPRKMGSYKYLLIYCSGLSIAYAA 57


>AC006645-4|AAF39845.2|  340|Caenorhabditis elegans Seven tm
           receptor protein 267 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -2

Query: 464 MFQKIIFPYQLVPNVIIKLNNFDQIMSVAPNKAESYKKIRLFCKNDSIAISS 309
           + + I  P   V +V++       +++ +P K  SYK + ++C   SIA ++
Sbjct: 6   LIKSITQPIAAVLSVVVNFILITLVVTSSPRKMGSYKYLLIYCSGLSIAYAA 57


>U28943-2|AAA68357.1|  613|Caenorhabditis elegans Hypothetical
           protein E04F6.5a protein.
          Length = 613

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 96  ISRVTGGRTGNNIVDIIQAN 37
           +SRVTGG TG+N   ++ A+
Sbjct: 467 VSRVTGGNTGSNFGQVVDAS 486


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,265,558
Number of Sequences: 27780
Number of extensions: 388427
Number of successful extensions: 967
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)