Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13e16
         (819 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   3.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.9  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    21   8.9  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
 Frame = -3

Query: 364 NHNYSGQEIDAMV--DRGIYLDYGHLKCAYCNDFSSNSREACDSVLKREHTNC 212
           NH  SG +    +  DR     YG   C  C  F   +     S   RE  NC
Sbjct: 76  NHPLSGSKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNC 128


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 791 AYFSLADGTWIPVEIKCPYNL 729
           AY     GTWI    KC Y L
Sbjct: 128 AYLIPEVGTWIRAVRKCLYKL 148


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 791 AYFSLADGTWIPVEIKCPYNL 729
           AY     GTWI    KC Y L
Sbjct: 128 AYLIPEVGTWIRAVRKCLYKL 148


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 341 NRCYGRSRNLFRLWTFKMCV 282
           N  YG    LF L TF +C+
Sbjct: 229 NSIYGFQNFLFVLSTFSICI 248


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,302
Number of Sequences: 336
Number of extensions: 4454
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22414104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)