Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13e16
         (819 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.84 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   3.4  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   4.5  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.84
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = -3

Query: 442 FAVENSNCERYQCADKRRLSFKMHSCNHNYSGQEIDAM-VDRGIYLDY--GHLKCAYCND 272
           F V+    + ++C +K + +  +         + +D + + R   +D    +LKC  C+ 
Sbjct: 96  FIVDRLRNDLFECENKEKSNVCLKFEEQKRRKKSLDDVKILRNDRIDSYKSNLKCDKCST 155

Query: 271 FSSNSREAC 245
           + SN  E C
Sbjct: 156 YQSNGEEVC 164


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 629 RAFLVNQQRGVFHAILAIAVPQLDTHLLHGRVSVNCTDILFPPESTFRRREKNTHRAXRR 808
           R F +++  G+   I   A+P+   +   G   ++C     PP  T   R+++  R  RR
Sbjct: 355 RNFTMSED-GMIEVIPLSAIPEPSKNPAMGHWQMSCVACSPPPRQTPPSRKESGRRRRRR 413


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -2

Query: 509 FCAARRNVLQQR 474
           FCAARR VL++R
Sbjct: 226 FCAARRIVLEER 237


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 16  VWWATSFELRSKRFSGFLYELNSNQN 93
           V++   FE  S   S  LYEL  NQ+
Sbjct: 300 VFFLAGFETSSTTMSNALYELALNQD 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,398
Number of Sequences: 438
Number of extensions: 5200
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)