Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13e14
(531 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q08539 Cluster: Early 65 kDa protein; n=9; Nucleopolyhe... 265 4e-70
UniRef50_Q71AI0 Cluster: HE65; n=5; Baculoviridae|Rep: HE65 - Ma... 52 6e-06
UniRef50_Q0IL51 Cluster: He65; n=1; Leucania separata nuclear po... 39 0.063
UniRef50_Q5C0L7 Cluster: SJCHGC06825 protein; n=1; Schistosoma j... 39 0.063
UniRef50_Q6QXJ2 Cluster: ORF132; n=1; Agrotis segetum granulovir... 38 0.19
UniRef50_Q4KT07 Cluster: HE65; n=1; Chrysodeixis chalcites nucle... 34 2.4
UniRef50_Q8JKK9 Cluster: Orf104; n=1; Heliothis zea virus 1|Rep:... 33 5.4
UniRef50_Q1GV78 Cluster: Putative uncharacterized protein; n=2; ... 32 7.2
UniRef50_Q6IIJ2 Cluster: HDC17962; n=1; Drosophila melanogaster|... 32 7.2
UniRef50_UPI0000DB7955 Cluster: PREDICTED: similar to Deformed C... 32 9.5
UniRef50_A4VEG3 Cluster: Putative uncharacterized protein; n=1; ... 32 9.5
>UniRef50_Q08539 Cluster: Early 65 kDa protein; n=9;
Nucleopolyhedrovirus|Rep: Early 65 kDa protein -
Autographa californica nuclear polyhedrosis virus
(AcMNPV)
Length = 553
Score = 265 bits (650), Expect = 4e-70
Identities = 132/175 (75%), Positives = 133/175 (76%)
Frame = -2
Query: 530 KLMTVSMVKIIYNLMRYKILNNAKGLLQLMFNYVYVEYYLDYKRTPKSTKILNMLFNVGD 351
KLMTVSMVKIIY LMRYKILNNAKGLLQLMFNYVYVEYYLDYKR PKSTKILNMLFNVGD
Sbjct: 104 KLMTVSMVKIIYTLMRYKILNNAKGLLQLMFNYVYVEYYLDYKRAPKSTKILNMLFNVGD 163
Query: 350 EIKIAMXXXXXXXXXXXXXXXXXXXNGVYKIDETXXXXXXXXXXXXXXXXLMQRGEYQQE 171
EIKI M NG YKIDET LMQRGEYQQE
Sbjct: 164 EIKITMDKNNQLVVNDLNVLDLNKNNGGYKIDETLTLFVKNVKLLKLYVKLMQRGEYQQE 223
Query: 170 WTEYFQQWKQRLQDRLHHVPEPPERTDIRHNIVMYALNERGPVMPEDENKICVPI 6
WTEYFQQWKQ+LQDRLHHVPEPPERTDIRHNIVMYALNERGPVMPEDENKI I
Sbjct: 224 WTEYFQQWKQQLQDRLHHVPEPPERTDIRHNIVMYALNERGPVMPEDENKIVYQI 278
>UniRef50_Q71AI0 Cluster: HE65; n=5; Baculoviridae|Rep: HE65 -
Mamestra configurata NPV-A
Length = 585
Score = 52.4 bits (120), Expect = 6e-06
Identities = 19/46 (41%), Positives = 31/46 (67%)
Frame = -2
Query: 173 EWTEYFQQWKQRLQDRLHHVPEPPERTDIRHNIVMYALNERGPVMP 36
E ++ + W++ L ++L +P PER D+R I +Y +NERGP+MP
Sbjct: 240 EEIQFMEDWQETLYEQLDRIPNLPERYDVRKVIALYMMNERGPIMP 285
>UniRef50_Q0IL51 Cluster: He65; n=1; Leucania separata nuclear
polyhedrosis virus|Rep: He65 - Leucania separata nuclear
polyhedrosis virus (LsNPV)
Length = 522
Score = 39.1 bits (87), Expect = 0.063
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -2
Query: 179 QQEWTEYFQQWKQRLQDRLHHVPEPPERTDIRHNIVMYALNERGPVMP 36
+ E Y W+ L+ +L P PER D+ +VMY L+E VMP
Sbjct: 181 EPEHKTYVYDWRDALEAKLSRYPPLPERCDVLKTMVMYMLDEGELVMP 228
>UniRef50_Q5C0L7 Cluster: SJCHGC06825 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC06825 protein - Schistosoma
japonicum (Blood fluke)
Length = 266
Score = 39.1 bits (87), Expect = 0.063
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 109 SGTWCSLSCNRCFHC*KYSVHSC*YSPRCMSF 204
SG CS + N CFHC YS+ S +PRC S+
Sbjct: 167 SGNSCSNNSNNCFHCCSYSLSSIKCTPRCCSY 198
>UniRef50_Q6QXJ2 Cluster: ORF132; n=1; Agrotis segetum
granulovirus|Rep: ORF132 - Agrotis segetum granulosis
virus (AsGV) (Agrotis segetumgranulovirus)
Length = 524
Score = 37.5 bits (83), Expect = 0.19
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Frame = -2
Query: 503 IIYNLMRYKI----LNNAKGLLQLMFNYVYVEYYLDYKRTPKSTKILNMLFN 360
I+ +++Y++ + K LL +MFN Y+E++L Y P+ K+ N+L++
Sbjct: 113 ILKTMVKYRVKTSLTDQPKQLLAIMFNLAYIEHWLKYNTFPEVNKLPNLLYD 164
Score = 37.1 bits (82), Expect = 0.25
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -2
Query: 173 EWTEYFQQWKQRLQDRLHHVPEPPERTDIRHNIVMYALN 57
E +Y + W+ ++ +L P ER DI+ NIVMY LN
Sbjct: 189 EEVDYIKNWQDAVEVKLESFGTPLERYDIQRNIVMYMLN 227
>UniRef50_Q4KT07 Cluster: HE65; n=1; Chrysodeixis chalcites
nucleopolyhedrovirus|Rep: HE65 - Chrysodeixis chalcites
nucleopolyhedrovirus
Length = 245
Score = 33.9 bits (74), Expect = 2.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -2
Query: 164 EYFQQWKQRLQDRLHHVPEPPERTDIRHNIVMYALNERGPVMPE 33
+Y W+ RL+ ++ +P R D+ I+MY L E +PE
Sbjct: 198 DYINNWQYRLKIQVSQLPATKNRYDVLKIIIMYMLGESNLYIPE 241
>UniRef50_Q8JKK9 Cluster: Orf104; n=1; Heliothis zea virus 1|Rep:
Orf104 - Heliothis zea virus 1
Length = 1585
Score = 32.7 bits (71), Expect = 5.4
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Frame = -2
Query: 521 TVSMVKIIYNLMRYKILNNAKGLLQLMFN----YVYVEYYLDYKRTPKS--TKILNMLFN 360
T S+++II ++ RYKI+N L +N Y+ +E + K T + + ++N +F+
Sbjct: 590 TESLIEIIKSMRRYKIMNELSRSFALTYNDLLDYIILEISIKQKNTMQEYVSAVMNHVFS 649
Query: 359 VG 354
+G
Sbjct: 650 LG 651
>UniRef50_Q1GV78 Cluster: Putative uncharacterized protein; n=2;
Sphingomonadaceae|Rep: Putative uncharacterized protein
- Sphingopyxis alaskensis (Sphingomonas alaskensis)
Length = 481
Score = 32.3 bits (70), Expect = 7.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 267 VQNRRNSNVICKKCQTFKIVRKTHATRRVSTRMDRIFST 151
V + R V C C K+VRK HA R+ R+ R+ +T
Sbjct: 97 VPSARAQTVKCSPCTGKKVVRKRHAARKPVKRVRRVVTT 135
>UniRef50_Q6IIJ2 Cluster: HDC17962; n=1; Drosophila
melanogaster|Rep: HDC17962 - Drosophila melanogaster
(Fruit fly)
Length = 787
Score = 32.3 bits (70), Expect = 7.2
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -2
Query: 182 YQQEWTEYFQQWKQRLQDRLHHVPEPPERTDIRHNIVMYALNERGPVMP 36
YQQ + QQ +Q+ Q +HH PP + + L GPV P
Sbjct: 450 YQQRQQQQHQQQQQQQQQPVHHHNHPPTASQLNRATAPAPLQLGGPVNP 498
>UniRef50_UPI0000DB7955 Cluster: PREDICTED: similar to Deformed
CG2189-PA; n=1; Apis mellifera|Rep: PREDICTED: similar
to Deformed CG2189-PA - Apis mellifera
Length = 412
Score = 31.9 bits (69), Expect = 9.5
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = -2
Query: 197 MQRGEYQQEWTEYFQQWKQRLQDRLHHVPEPPERTDIRHNIVMYALNERGPVMPEDENK 21
+Q G+ QQ+ + QQ Q+ Q + HHV + ++ D+ + +M + P M E+E +
Sbjct: 242 VQGGQQQQQQQQQSQQQSQQQQQQHHHVEDGSDQDDVEDDQMM----DGSPGMMEEEEE 296
>UniRef50_A4VEG3 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 235
Score = 31.9 bits (69), Expect = 9.5
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -2
Query: 530 KLMTVSMVKIIYNLMRYKILNNAKGLLQLMFNYVYVEY-YLDYKRTPKSTKILNMLFNVG 354
K V+ + IIYNL +++N+ K + + + Y Y Y YL Y LN +
Sbjct: 61 KRSLVNQIIIIYNLQVLRLINSLKIRIHISYLYQYPSYQYLSYITDKHKNSYLNQFIILQ 120
Query: 353 DEIKI 339
+ ++I
Sbjct: 121 NYLQI 125
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 466,632,541
Number of Sequences: 1657284
Number of extensions: 8272814
Number of successful extensions: 25419
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 24001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25363
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33873797511
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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