Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13e14
         (531 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0515 + 34457933-34458343,34458822-34459000,34459491-344598...    31   0.58 
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630...    31   0.76 
11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415     28   5.4  
12_01_0427 + 3359766-3360092,3360425-3360541,3360738-3360893,336...    27   7.1  
11_06_0284 + 21909758-21913645                                         27   7.1  
09_02_0548 - 10467342-10468810,10470309-10471632                       27   7.1  

>03_06_0515 +
           34457933-34458343,34458822-34459000,34459491-34459812,
           34459945-34460025
          Length = 330

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
 Frame = -2

Query: 194 QRGEYQQEWTEYFQQWKQRLQDRLHHVP-----EPPERTDIRHNIVMYALNERGP 45
           QRGE ++      + WK+ +Q+RL H P     +PP+RT  R N+ +  L E GP
Sbjct: 54  QRGERRELRA---RDWKEEVQERLIHEPARRRKKPPKRT-WRENLNLDFLAEHGP 104


>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
            29363099-29363206,29363583-29363697,29363781-29364819,
            29364904-29365014,29365268-29365326,29366601-29366763,
            29367162-29367435,29367530-29367680,29367766-29367877,
            29367978-29368143,29368261-29368331,29368474-29368565,
            29368721-29368883,29369134-29369205,29369236-29369263,
            29369519-29369910,29369991-29370106,29370201-29370498,
            29370820-29371139,29371332-29371590,29371985-29372302,
            29372423-29372527,29372648-29372776,29374001-29374381,
            29374467-29374604,29374949-29375185,29375264-29375569
          Length = 2094

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 185  EYQQEWTEYFQQWKQRLQDRLHHVPE 108
            E+   W++  Q+W +R++ +L HVP+
Sbjct: 1889 EWNGPWSDSSQEWTERMKHKLKHVPQ 1914


>11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415
          Length = 1490

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 52   RSFNAYMTMLWRMSVRSGGSG 114
            RS +A+M  +WR+++R+ G G
Sbjct: 1367 RSSSAFMVTIWRLALRNAGDG 1387


>12_01_0427 +
           3359766-3360092,3360425-3360541,3360738-3360893,
           3361009-3361144,3361303-3361436,3361832-3361987,
           3362496-3362594,3362817-3362932,3363358-3363532,
           3363807-3363885,3363989-3364132,3364206-3364319,
           3364415-3364536,3364929-3365011,3365091-3365188,
           3365300-3365420,3366237-3366333,3366782-3366874,
           3366948-3367053,3367395-3367540,3367617-3367697,
           3367838-3367921,3367997-3368132,3368334-3368400,
           3368943-3369102
          Length = 1048

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 254 RRFCTLHYFCLNPIHLNRSLPVDCFYPSQFLSHRLR*TACL 376
           +  C L Y  ++  +  R +  +CF+   FL+HR     CL
Sbjct: 128 KSLCNLPYIKIHMFYF-RGILQECFHEKDFLNHRYHAKRCL 167


>11_06_0284 + 21909758-21913645
          Length = 1295

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = +2

Query: 92   RCALAVLARGAVCPAIVASIVENIRSILVDTRRVA*VLRTILKV*HFLQITLEFRRFCTL 271
            RC  A++ R  VCPA + +    I+S +V    V   + TI K  H +   L        
Sbjct: 868  RCFDALICRWLVCPADIGA-TGKIKSCVVGD-PVHGFITTIAKKQHIMHTRLS--HHLAR 923

Query: 272  HYFCLNPIHLNRSLPVDCFY 331
            H+   N + +  S  +D F+
Sbjct: 924  HFSIFNDLQVRSSDRIDTFF 943


>09_02_0548 - 10467342-10468810,10470309-10471632
          Length = 930

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 450 QQSFGIVQNFVSHQIINNFHHR 515
           QQSF +  +   HQI+ ++HHR
Sbjct: 79  QQSFVLDYDIPPHQIVGHYHHR 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,355,718
Number of Sequences: 37544
Number of extensions: 220063
Number of successful extensions: 505
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)