Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13e14
         (531 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA ...    28   4.8  
AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line hel...    28   4.8  
L13200-7|AAA28189.1|  206|Caenorhabditis elegans Prion-like-(q/n...    27   8.4  

>AF079509-1|AAC28388.1|  720|Caenorhabditis elegans germline RNA
           helicase-3 protein.
          Length = 720

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 485 RYKILNNAKGLLQLMFNYVYVEYYLDYKRTPKSTKILNMLFN 360
           RY +L+ A  ++  M     +E  ++YK  PK+ K   M+F+
Sbjct: 451 RYLVLDEADRMIDSMGFGPEIEQIINYKNMPKNDKRQTMMFS 492


>AF003145-4|AAB57719.1|  720|Caenorhabditis elegans Germ-line
           helicase protein 3 protein.
          Length = 720

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 485 RYKILNNAKGLLQLMFNYVYVEYYLDYKRTPKSTKILNMLFN 360
           RY +L+ A  ++  M     +E  ++YK  PK+ K   M+F+
Sbjct: 451 RYLVLDEADRMIDSMGFGPEIEQIINYKNMPKNDKRQTMMFS 492


>L13200-7|AAA28189.1|  206|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 96
           protein.
          Length = 206

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -2

Query: 194 QRGEYQQEWTEYFQQWKQRLQDRLHHVPEPPERTD 90
           Q+G+YQQ   + +Q  +Q+ Q      P  P   D
Sbjct: 47  QQGQYQQPSGQQYQSMQQQFQSPQQQAPTQPTHPD 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,222,803
Number of Sequences: 27780
Number of extensions: 215598
Number of successful extensions: 600
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)