Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13e11
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    37   0.004
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po...    37   0.004
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    30   0.34 
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.4  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    27   2.4  
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    26   5.5  
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb...    26   5.5  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    25   9.6  

>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -2

Query: 774 VIMQLLRDNLTLWTSDTQ 721
           +IMQLLRDNLTLWTSD +
Sbjct: 220 LIMQLLRDNLTLWTSDAE 237


>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -2

Query: 774 VIMQLLRDNLTLWTSDTQ 721
           +IMQLLRDNLTLWTSD +
Sbjct: 221 LIMQLLRDNLTLWTSDAE 238


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1155

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 350  TSSLVGQVTFLSPHDRSEGDYGVFRFDSYSFSNDTFHNVLN 228
            +SS+ G V   S   +S+ +Y V  + +   S+DT+ NVLN
Sbjct: 954  SSSIPGPVLLASLKSQSKDEYSVLLYGTEVSSSDTYLNVLN 994


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 293 DYGVFRFDSY--SFSNDTFHNVLNGCTKTWHKKFVSVS 186
           DYG+ +  S   SF+N T  +VL  C   W   + SVS
Sbjct: 351 DYGMNKLVSLIESFNNITMESVLTECLNDWSTTWSSVS 388


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 568 LASASVMIPRQTTFSNVTRFLI-NTDENKCVCWGECGEILVVAA 696
           L + SV+I   +TFS V+R L  +T   + VCW  C   L+ A+
Sbjct: 43  LVNGSVVIWDLSTFS-VSRVLTGHTRAIQSVCWSSCDRFLLTAS 85


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 159 YYNLRKLQERNTNKFFVPCFGTAI*NIMK 245
           Y+N+R L    T K  +PC   AI  I++
Sbjct: 134 YHNIRHLDPEKTKKSILPCTPLAIVKILE 162


>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -3

Query: 539 FAADLPVPSKIKCCVIFDGFVF-LYLHWIADI 447
           FA  LPVP   K C  F  F+  L  +W+ D+
Sbjct: 31  FAPALPVPINDKVCHFFVFFLLTLVFYWVFDL 62


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 477 YKTVKDDTTFNFRRNGKVRCERLLTFLQATARVGFGDDTAPD 602
           ++T   D   +F + G++R  RL+TF       GFG    PD
Sbjct: 237 FETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPD 278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,381
Number of Sequences: 5004
Number of extensions: 60400
Number of successful extensions: 163
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)