Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13e11
(808 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 42 4e-04
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 41 0.001
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 41 0.001
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 40 0.002
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 38 0.012
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 38 0.012
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 36 0.038
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 30 2.5
06_03_0836 - 25249491-25249511,25249883-25250050,25250721-252509... 30 2.5
05_07_0236 - 28582157-28582552,28582639-28582911,28583324-285835... 30 2.5
02_02_0106 + 6814391-6817007,6817086-6817462 29 4.4
04_04_1588 - 34633057-34633824 28 7.6
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = -2
Query: 774 VIMQLLRDNLTLWTSDTQGDGDE 706
+IMQLLRDNLTLWTSD Q DG +
Sbjct: 230 LIMQLLRDNLTLWTSDMQDDGGD 252
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/27 (74%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Frame = -2
Query: 774 VIMQLLRDNLTLWTSD-TQGDGDEPAE 697
+IMQLLRDNLTLWTSD T+ GDE E
Sbjct: 220 LIMQLLRDNLTLWTSDLTEDGGDEVKE 246
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = -2
Query: 774 VIMQLLRDNLTLWTSDTQGDGDE 706
+IMQLLRDNLTLWTSD DG +
Sbjct: 203 LIMQLLRDNLTLWTSDANDDGGD 225
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = -2
Query: 774 VIMQLLRDNLTLWTSDTQGDGDE 706
+IMQLLRDNLTLWTSD DG +
Sbjct: 225 LIMQLLRDNLTLWTSDNAEDGGD 247
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 37.5 bits (83), Expect = 0.012
Identities = 17/23 (73%), Positives = 18/23 (78%)
Frame = -2
Query: 774 VIMQLLRDNLTLWTSDTQGDGDE 706
+IMQLLRDNLTLWTSD D E
Sbjct: 226 LIMQLLRDNLTLWTSDISEDTAE 248
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 37.5 bits (83), Expect = 0.012
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = -2
Query: 774 VIMQLLRDNLTLWTSDTQGDGDEPAEGGD 688
+IMQLLRDNL LW SD D D+ E D
Sbjct: 210 LIMQLLRDNLALWNSDMADDADDIRERTD 238
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 35.9 bits (79), Expect = 0.038
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = -2
Query: 774 VIMQLLRDNLTLWTSD 727
+IMQLLRDNLTLWTSD
Sbjct: 444 LIMQLLRDNLTLWTSD 459
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -2
Query: 774 VIMQLLRDNLTLWTSDTQG 718
++MQLL++NL LWTS+ G
Sbjct: 199 LMMQLLKENLALWTSELTG 217
>06_03_0836 -
25249491-25249511,25249883-25250050,25250721-25250920,
25251000-25251324,25251981-25252045,25252231-25252552,
25252650-25252730
Length = 393
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -3
Query: 335 GQVTFLSPHDRSEGDYGVFRFD-SYSFSNDTFHNVLNGCTKTW 210
G FL+ HD SEG+ +FR++ + F+ + F + NGC K +
Sbjct: 204 GWAPFLAAHDLSEGNILLFRYEGNMVFTVEVF--LQNGCLKEY 244
>05_07_0236 -
28582157-28582552,28582639-28582911,28583324-28583560,
28583653-28583694,28583782-28583964,28584393-28584524,
28585605-28586057
Length = 571
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 263 NMSQIGIHHNLLHCGHAAIGMLLGRP 340
N Q+ IHH+ L CG+A I + +P
Sbjct: 326 NSKQVSIHHSNLACGNALINSIKAKP 351
>02_02_0106 + 6814391-6817007,6817086-6817462
Length = 997
Score = 29.1 bits (62), Expect = 4.4
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = -1
Query: 637 CL*ENE*HSRTSSGAVSSPKPTRAVACKNVKSRSQRTFPFRLKL-NVVSSLTVL 479
CL +N H S +SSP PT C N+K F KL N ++SL L
Sbjct: 93 CLLKNLTHLDVSYNNISSPFPTMLYNCSNLKYLDLSNNAFAGKLPNDINSLPAL 146
>04_04_1588 - 34633057-34633824
Length = 255
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 649 KCVCWGECGEILVVAALGRLVAIALSV*RPK 741
+CVCW +++ ALG I +V +PK
Sbjct: 68 RCVCWTLLAVLVLAVALGATAGILYAVFKPK 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,566,138
Number of Sequences: 37544
Number of extensions: 351114
Number of successful extensions: 781
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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