Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13e11
         (808 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical pr...    39   0.004
U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein ...    39   0.004
Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical pr...    39   0.005
AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical ...    31   1.3  

>Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical
           protein M117.2 protein.
          Length = 248

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 19/27 (70%), Positives = 21/27 (77%)
 Frame = -2

Query: 774 VIMQLLRDNLTLWTSDTQGDGDEPAEG 694
           +IMQLLRDNLTLWTSD  G  D+  EG
Sbjct: 217 LIMQLLRDNLTLWTSDV-GAEDQEQEG 242


>U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein
           protein.
          Length = 248

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 19/27 (70%), Positives = 21/27 (77%)
 Frame = -2

Query: 774 VIMQLLRDNLTLWTSDTQGDGDEPAEG 694
           +IMQLLRDNLTLWTSD  G  D+  EG
Sbjct: 217 LIMQLLRDNLTLWTSDV-GAEDQEQEG 242


>Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical
           protein F52D10.3a protein.
          Length = 248

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = -2

Query: 774 VIMQLLRDNLTLWTSDTQGDGDE--PAEGGD 688
           +IMQLLRDNLTLWTSD   D  +    EGG+
Sbjct: 218 LIMQLLRDNLTLWTSDAATDDTDANETEGGN 248


>AL032631-7|CAB63337.2|  855|Caenorhabditis elegans Hypothetical
           protein Y106G6H.5 protein.
          Length = 855

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 209 AMFWYSHLKHYEMCHWKMNMSQIGIHHNLLHCGHAAIGMLLG 334
           A   YS+L H   CH   N+    I+H L   G A  G ++G
Sbjct: 424 AALTYSNLYHSHQCHTARNLRMAPIYHQLRDAG-AVFGEIMG 464


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,868,481
Number of Sequences: 27780
Number of extensions: 341401
Number of successful extensions: 906
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)