Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13e08
         (373 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   3.1  
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    21   5.4  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    20   9.4  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    20   9.4  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 239 PNSDGFVCDTLAASGYFSCFVAFSQAYCDF 328
           P  +G VC T+ A    +C   F    C+F
Sbjct: 346 PCQNGGVCTTIHAGHKCTCPEGFYGKNCEF 375


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 222 VFKRNTPSLSVI*YAKLSDTLNMRRGLWSYLRC 124
           +F    P L+ I    +  TLN RR L   L+C
Sbjct: 19  IFTCVKPQLTRISDEAIESTLNDRRYLLRQLKC 51


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 240 LILMALSVIPLRPADILVVLW 302
           LI++ALS   ++   +  +LW
Sbjct: 269 LIMLALSYTVIQEVMLFTILW 289


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 348 KSWLLVLKSQ*ACEKATKQLKY 283
           ++W  +LK+  +C K  K  +Y
Sbjct: 92  RTWTRLLKNLESCAKIKKTKRY 113


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,159
Number of Sequences: 336
Number of extensions: 1404
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7722305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)