Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13e08
(373 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018 104 2e-23
01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772... 103 4e-23
07_03_0078 - 13147741-13148913 30 0.50
09_01_0024 + 438288-438542,439020-439069,440096-440351 29 1.5
12_02_1029 - 25521641-25521852,25521978-25522035,25522142-255221... 28 2.0
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 28 2.0
03_06_0682 - 35516081-35518303 28 2.7
11_02_0038 - 7631462-7634428,7635975-7636250 27 3.6
08_02_0545 + 18470313-18470669,18470901-18471095,18471183-184713... 27 6.2
03_05_0422 - 24076917-24077125,24077209-24077266,24077350-240773... 27 6.2
12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194... 26 8.2
05_05_0306 - 23977543-23977614,23977709-23977799,23978296-239783... 23 9.7
>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
Length = 113
Score = 104 bits (250), Expect = 2e-23
Identities = 57/112 (50%), Positives = 70/112 (62%)
Frame = -1
Query: 337 PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQ 158
P+ + VG+ KGH TK + + RP+ KG TK FVR+L+REV G A
Sbjct: 6 PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAP 55
Query: 157 YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAQA 2
YEKR ELLKV KDKRALK KR+LGTH RAK+KREE++ VL +MR A
Sbjct: 56 YEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVLRKMRSGGGHA 107
>01_06_1294 -
36076524-36076554,36076821-36076891,36077221-36077275,
36077363-36077562,36078614-36078715
Length = 152
Score = 103 bits (247), Expect = 4e-23
Identities = 56/106 (52%), Positives = 69/106 (65%)
Frame = -1
Query: 337 PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQ 158
P+ + VG+ KGH TK + + RP+ KG TK FVR L+REVVG A
Sbjct: 6 PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAP 55
Query: 157 YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 20
YEKR ELLKV KDKRALK KR+LGTH RAK+KREE++ V+ +MR
Sbjct: 56 YEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMR 101
>07_03_0078 - 13147741-13148913
Length = 390
Score = 30.3 bits (65), Expect = 0.50
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 234 AGLILMALSVIPLRPADILVVLWPF 308
AGL+ AL VIP P + +V WPF
Sbjct: 71 AGLLYFALVVIPALPGVLRLVAWPF 95
>09_01_0024 + 438288-438542,439020-439069,440096-440351
Length = 186
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = -1
Query: 163 AQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSN 38
A++E R E LK ++++ A K LKR+ + ++KR + +N
Sbjct: 122 AEFELRREERLKEAEERTAKKRLKRQKKKQRKKEKKRSKTNN 163
>12_02_1029 -
25521641-25521852,25521978-25522035,25522142-25522191,
25522280-25522585,25522666-25523068,25524573-25524624,
25525523-25525572,25526151-25526306,25526987-25527286
Length = 528
Score = 28.3 bits (60), Expect = 2.0
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = -1
Query: 370 FLRICQSEIMAPRFEIAVGLRKG--H-KTTKISAGRKGITDKAIRIRPARLKGLQTKHSK 200
FL IC E++A E+ RKG H K + R G+ ++++ + G TK K
Sbjct: 401 FLTICSQELLARGTELLKRTRKGALHWKVVSVYIHRTGVV--MLKMKSRHVAGTLTKKKK 458
Query: 199 -FVRDLVREV 173
V D+ R+V
Sbjct: 459 NVVVDVCRDV 468
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 28.3 bits (60), Expect = 2.0
Identities = 20/76 (26%), Positives = 41/76 (53%)
Frame = -1
Query: 256 KAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGT 77
+A + + A L+ + S+ ++LV E +G EK+ +ELL + +++ ++LK +
Sbjct: 639 EAYQTKAASLEAVMESASEKEKELV-ESLGQITEEKKKLELLVLEYEEKTEEYLKEKQSL 697
Query: 76 HIRAKRKREELSNVLA 29
+R + + S VLA
Sbjct: 698 E---ERLQSQESKVLA 710
>03_06_0682 - 35516081-35518303
Length = 740
Score = 27.9 bits (59), Expect = 2.7
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = -1
Query: 238 PARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLK----VSKDKRALKFLKRRLGTHI 71
P + L+ + F+++++ +++ EKR ELL+ ++K LG+ +
Sbjct: 324 PKEVHHLKDLNENFIKEIIERSAFNSEEEKRQSELLEMVGDIAKKCSGSPLAATALGSTL 383
Query: 70 RAKRKREELSNVL 32
R K ++E +L
Sbjct: 384 RTKTTKKEWEAIL 396
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 27.5 bits (58), Expect = 3.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 118 DKRALKFLKRRLGTHIRAKRKREELSNV 35
DK+ LKFL R TH + E+++N+
Sbjct: 791 DKKHLKFLNLRCTTHTKESYTMEDITNI 818
>08_02_0545 +
18470313-18470669,18470901-18471095,18471183-18471362,
18471462-18471656,18472081-18472179,18472271-18472780,
18472896-18473225
Length = 621
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = -1
Query: 157 YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMRKAAAQ 5
YE +++ DK K ++ R + KR E SN++++++ AA+
Sbjct: 85 YEDPSLKAKLEQADKECQKKIQARSHIFEALRTKRSERSNIISELKPLAAE 135
>03_05_0422 -
24076917-24077125,24077209-24077266,24077350-24077399,
24077494-24077754,24077837-24078230,24081256-24081366,
24082255-24082596
Length = 474
Score = 26.6 bits (56), Expect = 6.2
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = -1
Query: 370 FLRICQSEIMAPRFEIAVGLRKG--H-KTTKISAGRKGITDKAIRIRPARLKGLQTKHSK 200
FL IC E++A E+ RKG H K + R G+ ++++ + G TK K
Sbjct: 348 FLGICSQELLARGTELLKRTRKGALHWKVVSVYINRMGLV--MLKMKSRHVAGTITKKKK 405
Query: 199 -FVRDLVREV 173
V D+ ++V
Sbjct: 406 SVVIDVCKDV 415
>12_01_0268 -
1941515-1941534,1941868-1942057,1942155-1942322,
1943425-1943568,1944284-1944443,1944512-1944621,
1944900-1945019,1945649-1945766,1946610-1946729,
1947228-1947285,1947590-1947723,1949332-1949414,
1949544-1949786,1949851-1949976,1950075-1951562
Length = 1093
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 118 DKRALKFLKRRLGTHIRAKRKREELSNVL 32
DK L K +G + +R+RE+LSN+L
Sbjct: 498 DKVLLNVRKLYIGLSMSKRRQREQLSNIL 526
>05_05_0306 -
23977543-23977614,23977709-23977799,23978296-23978361,
23978399-23978479,23979130-23979176,23979408-23979492,
23979570-23979656,23979728-23979801,23980083-23980166,
23980259-23980298,23980386-23980489
Length = 276
Score = 23.0 bits (47), Expect(2) = 9.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 67 AKRKREELSNVLAQMRKAAAQA 2
+KR+ E++ + L + KAAAQA
Sbjct: 247 SKRQHEKVPDDLVEQAKAAAQA 268
Score = 21.4 bits (43), Expect(2) = 9.7
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 175 VVGHAQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREEL 44
V+ H Q+E + L +++ + ++ K G H AK K EL
Sbjct: 195 VMTHEQWEIEKLNLSELTCREGIVEVAKIIYGVHDEAKDKDFEL 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,094,035
Number of Sequences: 37544
Number of extensions: 181721
Number of successful extensions: 428
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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