Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13e06
         (360 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    22   1.7  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    22   1.7  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   2.2  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         20   6.7  

>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 153 RTGPFTFLMI*RLVS 197
           RTG FTFLM+  ++S
Sbjct: 76  RTGSFTFLMVVAVLS 90


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 1.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 153 RTGPFTFLMI*RLVS 197
           RTG FTFLM+  ++S
Sbjct: 76  RTGSFTFLMVVAVLS 90


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.8 bits (44), Expect = 2.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 343 SFGARVLIALSSILQAKMDKPNV 275
           ++GA +L A   +L A  DKP +
Sbjct: 417 AYGAGLLSAYGELLHALSDKPEL 439


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 20.2 bits (40), Expect = 6.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 205 TRPSLEYTGPENQYGQALSRHEQER 279
           T+ +L       QY Q+  RH Q R
Sbjct: 190 TQYNLNSKSLPRQYSQSRGRHNQSR 214


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,175
Number of Sequences: 336
Number of extensions: 1561
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7299165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)