Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13e05
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    28   1.0  
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo...    25   7.4  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   9.7  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   9.7  

>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 248 FFLWQHYLFFILAKGVPIVPIWSL 319
           F++W H L +I+ K +PI P+ SL
Sbjct: 327 FWVWCHSLLYIVPKTLPIKPLSSL 350


>SPAC27F1.08 |pdt1||Nramp family manganese ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 32  CARCIHXYIX*TFYVIIHKSTFATVVHLILNTLLRLKVI 148
           C    + YI  +FYV+   +  AT +  ++ T + LK++
Sbjct: 138 CREHYNRYICWSFYVLAEIAIIATDIAEVIGTAVALKIL 176


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 199 FIVVFVSAKFIKSQEHIFFMATLFIF 276
           F  +F +    K  EH+   AT+FIF
Sbjct: 442 FASLFFTESLFKRSEHLALRATIFIF 467


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
            Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +1

Query: 613  SKIKTTLKTVHRKKKK 660
            +K+++ +KT+HR KKK
Sbjct: 1000 AKLRSMIKTIHRDKKK 1015


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,479,484
Number of Sequences: 5004
Number of extensions: 52054
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)