Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13e05
         (662 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    27   0.53 
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    24   3.7  
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    24   3.7  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    23   6.5  
AY146739-1|AAO12099.1|  176|Anopheles gambiae odorant-binding pr...    23   6.5  

>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 27.1 bits (57), Expect = 0.53
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 65  TFYVIIHKSTFATVVHLILNTLL 133
           TFY+II + T    V+LIL T+L
Sbjct: 223 TFYIIIRRKTLFYTVNLILPTVL 245


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 307 NMESVKM-YLRFYFISKMLFSFMLIKY 384
           N++  +M YLR Y +++  F+F L KY
Sbjct: 342 NLKKDRMKYLRRYRLNRSAFNFRLFKY 368


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
           anion exchanger protein.
          Length = 1102

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 429 AFWLFLYTLFLRPIVVF 379
           A W+FLY   L PI+ F
Sbjct: 526 ASWIFLYFACLSPIITF 542


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 328 YLRFYFISKMLFSFMLIKYDNRSKKKC 408
           YLRF  +S  LF + L     + KK C
Sbjct: 255 YLRFGCLSTRLFYYQLTDLYKKIKKAC 281


>AY146739-1|AAO12099.1|  176|Anopheles gambiae odorant-binding
           protein AgamOBP29 protein.
          Length = 176

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 331 LRFYFISKMLFSFMLIKYDNRSKKKC 408
           LR +++  +   F ++  DNR K KC
Sbjct: 122 LREFYVDSIQECFHMLGLDNRLKDKC 147


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,702
Number of Sequences: 2352
Number of extensions: 11665
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66068490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)