Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13e05
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93379-5|CAB07593.3|  351|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z81047-5|CAB02832.3|  390|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF385631-1|AAK84832.1|  671|Caenorhabditis elegans serotonin reu...    28   5.1  
AC024812-6|AAF59549.2|  671|Caenorhabditis elegans Modulation of...    28   5.1  
U23510-3|AAC46782.1|  340|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>Z93379-5|CAB07593.3|  351|Caenorhabditis elegans Hypothetical
           protein F21H7.7 protein.
          Length = 351

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 23/60 (38%), Positives = 28/60 (46%)
 Frame = -1

Query: 533 VVGECAKCIYVYNLFNPEAPLSPT*HEQNRFRKKRPSGYFFTHFFLDLLSYLMSIKENNI 354
           + G CA C Y Y LF   +   P    QNRFR  R    F  +FF+ L   L+ I   NI
Sbjct: 118 IFGICAICSYTY-LFESRSSSLP----QNRFRISRRKIKFLYYFFVFLPFILIVIFLLNI 172


>Z81047-5|CAB02832.3|  390|Caenorhabditis elegans Hypothetical
           protein C41G6.7 protein.
          Length = 390

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = +2

Query: 335 DFILFPRC-CFLLCSLNTTIGLRKSV*RNNQKAFFF*IYFAHVTSVTAALPG-*INYKHK 508
           DF +F      +LC L+  I  RKS+ +N    F   I  + + + + ALP   + YK+ 
Sbjct: 49  DFNIFTEIVAIVLCLLHLMILFRKSLRKNGVFVFMIAICISDILNFSLALPNDSMYYKYS 108

Query: 509 -YILHIHQQRN 538
            Y++ +H +++
Sbjct: 109 WYLVPMHLEQS 119


>AF385631-1|AAK84832.1|  671|Caenorhabditis elegans serotonin
           reuptake transporter protein.
          Length = 671

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +3

Query: 282 WQKVCPLFQ---YGVCENVLAILFYFQDVV 362
           W+KVCPLF+   YG+C     I  ++  ++
Sbjct: 172 WRKVCPLFRGIGYGICCICTFIAIFYNAII 201


>AC024812-6|AAF59549.2|  671|Caenorhabditis elegans Modulation of
           locomotion defectiveprotein 5 protein.
          Length = 671

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +3

Query: 282 WQKVCPLFQ---YGVCENVLAILFYFQDVV 362
           W+KVCPLF+   YG+C     I  ++  ++
Sbjct: 172 WRKVCPLFRGIGYGICCICTFIAIFYNAII 201


>U23510-3|AAC46782.1|  340|Caenorhabditis elegans Hypothetical
           protein R12C12.3 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -2

Query: 145 YFQTQQRVQY*MYDSCKCRFMYDNIKCSXNIXMNTS 38
           Y+   ++ +   +D  +CR   D++KCS  + +N+S
Sbjct: 290 YYGFSEKFRTIFHDIIRCRQRLDDVKCSTYLPVNSS 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,912,615
Number of Sequences: 27780
Number of extensions: 299198
Number of successful extensions: 688
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)