Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13e03
         (699 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-1|CAJ14152.1|  324|Anopheles gambiae putative dodecenoy...    27   0.75 
AF487536-1|AAL93297.1|  504|Anopheles gambiae cytochrome P450 CY...    25   1.7  
AF063021-4|AAC16248.1|   93|Anopheles gambiae unknown protein.         24   4.0  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   7.0  
U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette...    23   9.2  
U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette...    23   9.2  
U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette...    23   9.2  

>CR954257-1|CAJ14152.1|  324|Anopheles gambiae putative
           dodecenoylCoA deltaisomerase protein.
          Length = 324

 Score = 26.6 bits (56), Expect = 0.75
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
 Frame = -2

Query: 500 SIPGEPILFTENEGVLLCSVDRPSI---VKMLSREFDTEALVNFEND-NCNVRIAKTFGA 333
           S P EPI+  +   + L  ++RP +   +  ++    + A+  FEND   +V +    G 
Sbjct: 41  SHPEEPIVVEKENNITLIGINRPKVRNAIDSITGRKLSAAIAEFENDPKADVGVLHGIGG 100

Query: 332 S 330
           S
Sbjct: 101 S 101


>AF487536-1|AAL93297.1|  504|Anopheles gambiae cytochrome P450
           CYP6Y1 protein.
          Length = 504

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 611 IAAVVFSTLAFIHNRFH 561
           + A+V S LA+IH R+H
Sbjct: 9   VLAIVLSCLAWIHRRYH 25


>AF063021-4|AAC16248.1|   93|Anopheles gambiae unknown protein.
          Length = 93

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 457 CCCAPSTDRL 428
           CCC PS++RL
Sbjct: 67  CCCVPSSERL 76


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -2

Query: 482 ILFTENEGVLLCSVDRPSIVKMLSREFDTEALVNFENDNCNVRIAKTFGASKRKNTTRSD 303
           +L+  N    LCS   PS+V ++  +    AL    + N  +  +    ++ R+N+T + 
Sbjct: 288 LLYANNAAAKLCSPVFPSVVPLVPLDSYHPAL----DFNIRINSSTRRNSTTRQNSTTTA 343

Query: 302 DYESN-KQPDY 273
            Y  N  + DY
Sbjct: 344 LYRYNFAKADY 354


>U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 104 RSTMSTKTSNLLLSKFKFTIEDF 36
           R+ ++   S ++L  F F +EDF
Sbjct: 643 RANVTCPRSEIILETFNFRVEDF 665


>U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 104 RSTMSTKTSNLLLSKFKFTIEDF 36
           R+ ++   S ++L  F F +EDF
Sbjct: 643 RANVTCPRSEIILETFNFRVEDF 665


>U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 673

 Score = 23.0 bits (47), Expect = 9.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 104 RSTMSTKTSNLLLSKFKFTIEDF 36
           R+ ++   S ++L  F F +EDF
Sbjct: 621 RANVTCPRSEIILETFNFRVEDF 643


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 700,422
Number of Sequences: 2352
Number of extensions: 12857
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71086350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)