Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13e02
(752 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-l... 173 5e-42
UniRef50_Q8UZB5 Cluster: Coat protein; n=1; Grapevine fleck viru... 56 7e-07
UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red ... 54 5e-06
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 46 8e-04
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 45 0.002
UniRef50_Q8V0G9 Cluster: Coat protein; n=1; Bermuda grass etched... 44 0.004
UniRef50_P20124 Cluster: Coat protein; n=10; Tymovirus|Rep: Coat... 42 0.022
UniRef50_O89519 Cluster: Virion protein; n=2; Tymovirus|Rep: Vir... 41 0.029
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 40 0.050
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 40 0.087
UniRef50_A4BLY4 Cluster: TonB-like protein; n=1; Nitrococcus mob... 38 0.20
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 38 0.27
UniRef50_Q4S5F6 Cluster: Chromosome 19 SCAF14731, whole genome s... 36 0.81
UniRef50_P19128 Cluster: Coat protein; n=9; Tymovirus|Rep: Coat ... 36 0.81
UniRef50_UPI0000E249B2 Cluster: PREDICTED: hypothetical protein;... 36 1.1
UniRef50_Q2GV52 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_Q0V1A0 Cluster: Putative uncharacterized protein; n=1; ... 36 1.1
UniRef50_UPI0000DB7F80 Cluster: PREDICTED: similar to SSXT prote... 36 1.4
UniRef50_A6RXJ9 Cluster: Putative uncharacterized protein; n=2; ... 36 1.4
UniRef50_A5XB37 Cluster: Cytosolic glucose-6-phosphate isomerase... 35 1.9
UniRef50_P03608 Cluster: Coat protein; n=21; Turnip yellow mosai... 35 1.9
UniRef50_Q5XL24 Cluster: pH-response transcription factor pacC/R... 35 2.5
UniRef50_P35927 Cluster: Coat protein; n=2; Erysimum latent viru... 35 2.5
UniRef50_Q9NKT1 Cluster: Putative uncharacterized protein; n=2; ... 34 3.3
UniRef50_UPI0000E46430 Cluster: PREDICTED: similar to doublesex ... 34 4.3
UniRef50_UPI00003654E6 Cluster: Ankyrin repeat domain-containing... 34 4.3
UniRef50_A2QU02 Cluster: Similarity: similarities correspond to ... 33 5.7
UniRef50_UPI0000D9C9FB Cluster: PREDICTED: hypothetical protein,... 33 7.6
UniRef50_Q8DM37 Cluster: Tll0286 protein; n=1; Synechococcus elo... 33 7.6
UniRef50_A4TWK0 Cluster: Glutamine synthetase adenylyltransferas... 33 7.6
UniRef50_Q55J15 Cluster: Putative uncharacterized protein; n=2; ... 33 7.6
UniRef50_Q12873 Cluster: Chromodomain-helicase-DNA-binding prote... 33 7.6
UniRef50_UPI0000F2185F Cluster: PREDICTED: hypothetical protein;... 33 10.0
UniRef50_UPI0000499027 Cluster: hypothetical protein 189.t00012;... 33 10.0
UniRef50_Q4SSN8 Cluster: Chromosome 15 SCAF14367, whole genome s... 33 10.0
UniRef50_Q9F3J4 Cluster: Putative uncharacterized protein SCO527... 33 10.0
UniRef50_Q5D5G3 Cluster: Phage tail sheath protein; n=1; Wolbach... 33 10.0
UniRef50_A7CRS3 Cluster: Putative uncharacterized protein; n=1; ... 33 10.0
UniRef50_Q2WBY1 Cluster: Fork head protein; n=1; Platynereis dum... 33 10.0
UniRef50_Q5K9V8 Cluster: Fork head homolog XFD-2, putative; n=2;... 33 10.0
>UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-like
latent virus|Rep: Coat protein - Bombyx mori Macula-like
latent virus
Length = 237
Score = 173 bits (420), Expect = 5e-42
Identities = 81/101 (80%), Positives = 86/101 (85%)
Frame = -2
Query: 751 DLCWXMLTSQLKESMCWPPXSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPR 572
DLCW ++ SS+RIT+GGLALMHQATLPCDLGYINPIIKSPIPYTNHPR
Sbjct: 137 DLCWTTADVTVEGFNVLATPSSARITMGGLALMHQATLPCDLGYINPIIKSPIPYTNHPR 196
Query: 571 LNIHFHQSPDAVLEGIRAGVKASVVIRGSISVSHPLVTGHG 449
LNIHFHQS DAVLEG+RAGVKASVVIRGSISVSHPLVTGHG
Sbjct: 197 LNIHFHQSADAVLEGVRAGVKASVVIRGSISVSHPLVTGHG 237
>UniRef50_Q8UZB5 Cluster: Coat protein; n=1; Grapevine fleck
virus|Rep: Coat protein - Grapevine fleck virus
Length = 230
Score = 56.4 bits (130), Expect = 7e-07
Identities = 31/96 (32%), Positives = 46/96 (47%)
Frame = -2
Query: 751 DLCWXMLTSQLKESMCWPPXSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPR 572
DLCW + + S + RI G + LP +L +NP IK + YT+ PR
Sbjct: 128 DLCWTIDSVTPARSEILSVFGAQRIAWGSVHFSAPILLPAELSSLNPTIKDSVTYTDCPR 187
Query: 571 LNIHFHQSPDAVLEGIRAGVKASVVIRGSISVSHPL 464
L F+++ V G A + S++IRG I S P+
Sbjct: 188 LTCGFYRNDACVALGSSAPICGSILIRGVIECSAPI 223
>UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red
Globe virus|Rep: 25kDa coat protein - Grapevine Red
Globe virus
Length = 235
Score = 53.6 bits (123), Expect = 5e-06
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = -2
Query: 751 DLCWXMLTSQLKESMCWPPXSSSRITIGG-LALMHQATLPCDLGYINPIIKSPIPYTNHP 575
D W + + S +R+T GG + + LP DL NP++K + Y N P
Sbjct: 131 DAHWHSSSVSITGSQILSTYGGTRVTFGGPITSSNPIILPADLRSTNPVVKDTVSYNNTP 190
Query: 574 RLNIHFHQSPDAVLEGIRAGV-KASVVIRGSISVS 473
+L + FH++ DA + V S+VIRG + S
Sbjct: 191 KLTVAFHKNTDAPAVSVTTPVIYGSIVIRGVVRCS 225
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 46.4 bits (105), Expect = 8e-04
Identities = 26/90 (28%), Positives = 40/90 (44%)
Frame = -2
Query: 751 DLCWXMLTSQLKESMCWPPXSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPR 572
DL W + +R IGG L H L DL Y+NP+IK + Y + P+
Sbjct: 1879 DLVWSTNNVIFTDLQILQVYGGTRFAIGGPLLSHTYELRADLSYLNPVIKDSVSYVDTPK 1938
Query: 571 LNIHFHQSPDAVLEGIRAGVKASVVIRGSI 482
L ++ + D G A A+V++ G +
Sbjct: 1939 LTLN---ASDPTGSGSTATTVATVLVSGKL 1965
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 45.2 bits (102), Expect = 0.002
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = -2
Query: 676 TIGGLALMHQAT-LPCDLGYINPIIKSPIPYTNHPRLNIHFHQSPDAVLEGIRAGVKASV 500
T+GG LM T LP DL +NP++K P+ YT+ PR + + + G + ++
Sbjct: 2118 TVGGPVLMSSTTHLPADLTRLNPVLKGPVKYTDCPRFSYSVYSN-----GGTKGTNLCTI 2172
Query: 499 VIRGSISVSHP 467
++RG + +S P
Sbjct: 2173 ILRGVVRLSGP 2183
>UniRef50_Q8V0G9 Cluster: Coat protein; n=1; Bermuda grass
etched-line virus|Rep: Coat protein - Bermuda grass
etched-line virus
Length = 195
Score = 44.0 bits (99), Expect = 0.004
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Frame = -2
Query: 682 RITIGGLALMHQAT-LPCDLGYINPIIKSPIPYTNHPRLNIHFHQSPDAVLEGIRAGVK- 509
+IT+GG ++ T +P DL +NP+IKS + Y + PR ++ P ++ G A K
Sbjct: 121 QITVGGPVMLSSTTVIPADLSRMNPVIKSSVSYNDCPRWSL---TCP--LVSGSSANTKL 175
Query: 508 ASVVIRGSISVSHP 467
A++ IRG++ +S P
Sbjct: 176 ATLYIRGTVRLSSP 189
>UniRef50_P20124 Cluster: Coat protein; n=10; Tymovirus|Rep: Coat
protein - Ononis yellow mosaic virus
Length = 192
Score = 41.5 bits (93), Expect = 0.022
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = -2
Query: 751 DLCWXMLTSQLKESMCWPPXSSSRITIGGLALMHQA-TLPCDLGYINPIIKSPIPYTNHP 575
DL W S +R T+GG +Q + P L +NPIIK + Y + P
Sbjct: 93 DLIWVPSNSSASPKTILQTYGGNRFTVGGPITSNQIISFPLRLDSVNPIIKDSVLYLDSP 152
Query: 574 RLNIHFHQSPDAVLEGIRAGVKASVVIRGSISVSHPLV 461
RL + F +P ++ AS++IRG + +S LV
Sbjct: 153 RL-LAFSPAPPET----QSIPSASLLIRGKLRLSSILV 185
>UniRef50_O89519 Cluster: Virion protein; n=2; Tymovirus|Rep: Virion
protein - Dulcamara mottle virus
Length = 188
Score = 41.1 bits (92), Expect = 0.029
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = -2
Query: 751 DLCWXMLTSQLKESMCWPPXSSSRITIGGLALMHQAT-LPCDLGYINPIIKSPIPYTNHP 575
D+ W S S R IGG Q +PC+L +N +IK YT+ P
Sbjct: 93 DVVWVPANSTATPSKILSVYGGQRFLIGGTLTTSQVIRVPCNLQSVNAMIKDSTIYTDSP 152
Query: 574 RLNIHFHQSPDAVLEGIRAGVKASVVIRGSISVSHPLV 461
+L ++ SP V +G A+V I G I +S PL+
Sbjct: 153 KLLVY---SP--VAKGSPKTPSATVQIAGQILLSAPLL 185
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 40.3 bits (90), Expect = 0.050
Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = -2
Query: 679 ITIGGLALMHQ-ATLPCDLGYINPIIKSPIPYTNHPRLNIHFHQSPDAVLEGIRAGVKAS 503
IT GG M+ AT+P DL INP IKS + Y + PRL + A + A
Sbjct: 1997 ITAGGPVSMNALATVPADLTRINPRIKSSVGYLDTPRLTGTTMKCATAQTLPL-----AY 2051
Query: 502 VVIRGSISVSHPL 464
V+IRG +SVS P+
Sbjct: 2052 VMIRGMVSVSGPM 2064
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 39.5 bits (88), Expect = 0.087
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = -2
Query: 682 RITIGGLALMHQAT-LPCDLGYINPIIKSPIPYTNHPRLNIHFHQSPDAVLEGIRAGVKA 506
+IT+GG ++ T +P DL +NP IKS + Y + PR + S AV G A
Sbjct: 1951 QITVGGPVMLSSTTAVPADLARMNPFIKSSVSYNDTPR----WTMSVPAVTGGDTKIPLA 2006
Query: 505 SVVIRGSISVSHP 467
+ +RG + V P
Sbjct: 2007 TAFVRGIVRVRAP 2019
>UniRef50_A4BLY4 Cluster: TonB-like protein; n=1; Nitrococcus
mobilis Nb-231|Rep: TonB-like protein - Nitrococcus
mobilis Nb-231
Length = 307
Score = 38.3 bits (85), Expect = 0.20
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 6/94 (6%)
Frame = -3
Query: 660 PLCIKPP-SPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPG-LKPPLSS-- 493
P+ +KP S + + R S PR HTP P+ + PL P LKPP S+
Sbjct: 112 PIPVKPAKSEPVVEQTPRESTPREHTPKPPEPPQPKLQPLKAAESARPPAPLKPPTSTHN 171
Query: 492 --EALSAYLTPSSLGMAKGVSPPYFQVNDESQAS 397
+ +A L PS+ G Q D S A+
Sbjct: 172 SVDERTAALAPSAKGATASPGQTAGQATDHSDAT 205
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 37.9 bits (84), Expect = 0.27
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = -2
Query: 679 ITIGGLALMHQAT-LPCDLGYINPIIKSPIPYTNHPRLNIHFHQSPDAVLEGIRAGVKAS 503
+T+GG LM T +P DL +NP+IK+ + +T+ PR + + + + +
Sbjct: 1992 LTLGGPVLMGSVTRIPADLTRLNPVIKTAVGFTDCPRFTYSVYANGGSANTPL-----IT 2046
Query: 502 VVIRGSISVSHP 467
V++RG I +S P
Sbjct: 2047 VMVRGVIRLSGP 2058
>UniRef50_Q4S5F6 Cluster: Chromosome 19 SCAF14731, whole genome
shotgun sequence; n=2; Clupeocephala|Rep: Chromosome 19
SCAF14731, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 842
Score = 36.3 bits (80), Expect = 0.81
Identities = 23/61 (37%), Positives = 28/61 (45%)
Frame = -3
Query: 645 PPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEALSAYLTP 466
PP P+IS TS+ +S P P P + +P TP A GL S S Y TP
Sbjct: 709 PPHPSISLTSSSTSTPNPAPPPVPTSAHLQPSPSTPSSSSAANGLS---SLHPSSLYKTP 765
Query: 465 S 463
S
Sbjct: 766 S 766
>UniRef50_P19128 Cluster: Coat protein; n=9; Tymovirus|Rep: Coat
protein - Cacao yellow mosaic virus
Length = 188
Score = 36.3 bits (80), Expect = 0.81
Identities = 19/61 (31%), Positives = 31/61 (50%)
Frame = -2
Query: 640 LPCDLGYINPIIKSPIPYTNHPRLNIHFHQSPDAVLEGIRAGVKASVVIRGSISVSHPLV 461
+PC L INPIIK + YT+ P+L I+ + ++ IRG + + PL+
Sbjct: 130 VPCPLTNINPIIKDSVTYTDTPKLLIY------STAPSYSTSATCTLTIRGKVRLHSPLL 183
Query: 460 T 458
+
Sbjct: 184 S 184
>UniRef50_UPI0000E249B2 Cluster: PREDICTED: hypothetical protein;
n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
protein - Pan troglodytes
Length = 340
Score = 35.9 bits (79), Expect = 1.1
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -3
Query: 636 PAISXTSTRSSNPRFHTPTTPDLTSISINPLTP-Y*KEFAPGLKPPLSSEALSAYLTPSS 460
P+ + T TRSS P +TP LT S LTP P P L+ + + L PSS
Sbjct: 148 PSSTPTLTRSSTPTLIPSSTPTLTPSSRPTLTPSSTPTLTPSSTPTLTPSSTTPTLNPSS 207
Query: 459 LGMAKGVSPP 430
L + S P
Sbjct: 208 LPILTPSSTP 217
>UniRef50_Q2GV52 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 437
Score = 35.9 bits (79), Expect = 1.1
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Frame = -3
Query: 663 SPLCIKPPSPAISXTSTRS-SNPR---FHTPT-TPDLTSISINPLTPY*KEFAPGLKPPL 499
SPL I PPSP + T T++ + P+ F PT TP S NP T Y + P L
Sbjct: 54 SPLFIIPPSPTQTQTQTQTQTQPQVTYFPAPTPTPIFRSPPPNPPTLYAPKLKPNPDAGL 113
Query: 498 SSEALSAYLTPSSLGMAKGVSPP 430
S ++ +T SSL + PP
Sbjct: 114 LSSNSTSTITTSSLLLPLSDIPP 136
>UniRef50_Q0V1A0 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 1581
Score = 35.9 bits (79), Expect = 1.1
Identities = 26/87 (29%), Positives = 35/87 (40%)
Frame = -3
Query: 660 PLCIKPPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEALS 481
P +PP A S + S+ P + P+ S P + AP PP SSEA S
Sbjct: 577 PTSSQPPGSASSDSPPASTQPSWSAPSDSRPAS---QPASSQPSGSAPSSAPPASSEAPS 633
Query: 480 AYLTPSSLGMAKGVSPPYFQVNDESQA 400
+ + L + SPP SQA
Sbjct: 634 SAPPSTQLASSDAPSPPASSAQGSSQA 660
>UniRef50_UPI0000DB7F80 Cluster: PREDICTED: similar to SSXT protein
(Synovial sarcoma, translocated to X chromosome) (SYT
protein); n=1; Apis mellifera|Rep: PREDICTED: similar to
SSXT protein (Synovial sarcoma, translocated to X
chromosome) (SYT protein) - Apis mellifera
Length = 608
Score = 35.5 bits (78), Expect = 1.4
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = -1
Query: 683 SHYYWRSRPYASSHPPLRSRXHQPDHQIPDSIHQPP 576
S Y P+ SSHPP HQ HQ P + HQPP
Sbjct: 420 SGYPVHQTPHPSSHPP-HQPPHQSPHQPPHAPHQPP 454
>UniRef50_A6RXJ9 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 940
Score = 35.5 bits (78), Expect = 1.4
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 668 RSRPYASSHPPLRSRXHQPDHQIPDSIHQ 582
R P A+SHPP + H P HQ P HQ
Sbjct: 206 RQHPSATSHPPPTPQHHLPQHQTPSHSHQ 234
>UniRef50_A5XB37 Cluster: Cytosolic glucose-6-phosphate isomerase;
n=29; Eukaryota|Rep: Cytosolic glucose-6-phosphate
isomerase - Porphyra yezoensis
Length = 635
Score = 35.1 bits (77), Expect = 1.9
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = -2
Query: 658 LMHQA-TLPCD-LGYI---NPIIKSPIPYTNHPRLNIHFHQSPDAVLEG 527
L+H T+PCD +G++ NPI + P +NH L +F PDA+ G
Sbjct: 464 LLHMGQTVPCDFIGFMESQNPICEEGEPVSNHDELVANFFAQPDALANG 512
>UniRef50_P03608 Cluster: Coat protein; n=21; Turnip yellow mosaic
virus|Rep: Coat protein - Turnip yellow mosaic virus
Length = 189
Score = 35.1 bits (77), Expect = 1.9
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Frame = -2
Query: 748 LCWXMLTSQLKESMCWPPXSSSRITIGG-LALMHQATLPCDLGYINPIIKSPIPYTNHPR 572
+CW S + + IGG + + + C L +NP +K I Y + P+
Sbjct: 93 VCWVPANSPVTPAQITKTYGGQIFCIGGAINTLSPLIVKCPLEMMNPRVKDSIQYLDSPK 152
Query: 571 LNIHFHQSPDAVLEGIRAGVKASVVIRGSISVSHPLVT 458
L I P A + + G++S+ PL+T
Sbjct: 153 LLISITAQPTA-----PPASTCIITVSGTLSMHSPLIT 185
>UniRef50_Q5XL24 Cluster: pH-response transcription factor
pacC/RIM101; n=15; Pezizomycotina|Rep: pH-response
transcription factor pacC/RIM101 - Aspergillus giganteus
Length = 678
Score = 34.7 bits (76), Expect = 2.5
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -3
Query: 618 STRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEALSAYLTPSSLGMAKGV 439
S S P H T ++ +P T P L PP S+++ ++ +P S+ A V
Sbjct: 391 SPPSQLPPSHATATTSAATMMSHPATHSPSTGTPALTPPSSAQSYTSGRSPISMSSAHRV 450
Query: 438 SPPY 427
SPP+
Sbjct: 451 SPPH 454
>UniRef50_P35927 Cluster: Coat protein; n=2; Erysimum latent
virus|Rep: Coat protein - Erysimum latent virus (ELV)
Length = 202
Score = 34.7 bits (76), Expect = 2.5
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Frame = -2
Query: 748 LCWXMLTSQLKESMCWPPXSSSRITIGG-LALMHQATLPCDLGYINPIIKSPIPYTNHPR 572
L W +S S +I++GG + A + +L +NP IK YT+ P+
Sbjct: 105 LIWVPASSTTTSSQILGTYGGQQISVGGQVTNSSPAKVSANLLMMNPHIKDSTSYTDTPK 164
Query: 571 LNIHFHQSPDAVLEGIRAGVKASVVIRGSISVSHP 467
L ++ S AV + AS+++ G + +S P
Sbjct: 165 LLVY---STPAVPDDKLTTSSASIIVFGEVLLSSP 196
>UniRef50_Q9NKT1 Cluster: Putative uncharacterized protein; n=2;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 2487
Score = 34.3 bits (75), Expect = 3.3
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Frame = -3
Query: 663 SPLCIKPPSPAISXTSTRSSNPRFHTPTTPDL---TSISINPLTPY*KEFAPGLKPPL-- 499
S + PPS A+ SS+P+ P +P L + PLT Y + PG P
Sbjct: 2120 SSAAVMPPSTAV---HAMSSHPQLQQPQSPSLLFDAGSLLQPLTWYPYAYMPGTANPYAQ 2176
Query: 498 SSEALSAYLTPSSLGMAKGVS 436
S+++ SA +TP+ A ++
Sbjct: 2177 SADSSSARITPAKAATASSMT 2197
>UniRef50_UPI0000E46430 Cluster: PREDICTED: similar to doublesex and
mab-3 related transcription factor 5; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
doublesex and mab-3 related transcription factor 5 -
Strongylocentrotus purpuratus
Length = 504
Score = 33.9 bits (74), Expect = 4.3
Identities = 25/84 (29%), Positives = 38/84 (45%)
Frame = -3
Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEALSAYLTPS 463
P+P S TS + +PR +P T S+S ++P K +P P + S S +
Sbjct: 205 PAPPHSPTSLPNQDPRVSSPDTRSPRSVSAGTMSPT-KSLSPVASPRIESAEQSEVIRTP 263
Query: 462 SLGMAKGVSPPYFQVNDESQASRL 391
GM + S F + S+A RL
Sbjct: 264 GFGMIQPGSGLDF---EHSEARRL 284
>UniRef50_UPI00003654E6 Cluster: Ankyrin repeat domain-containing
protein 13B.; n=1; Takifugu rubripes|Rep: Ankyrin repeat
domain-containing protein 13B. - Takifugu rubripes
Length = 634
Score = 33.9 bits (74), Expect = 4.3
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = -1
Query: 200 PSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASL 87
PSC F PP TVL R L++++ LL +IQ SL
Sbjct: 506 PSCVFEVPPGYTVLGSKQRDTLREDEEDLLQFAIQQSL 543
>UniRef50_A2QU02 Cluster: Similarity: similarities correspond to
multiple threonine and proline residues; n=2;
Aspergillus|Rep: Similarity: similarities correspond to
multiple threonine and proline residues - Aspergillus
niger
Length = 699
Score = 33.5 bits (73), Expect = 5.7
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 648 KPPSPAISXTSTRSSNPRFHTPTTPDL 568
+ P P + TSTR+SNP HTP P L
Sbjct: 29 RKPHPPKATTSTRTSNPAAHTPNQPPL 55
>UniRef50_UPI0000D9C9FB Cluster: PREDICTED: hypothetical protein,
partial; n=1; Macaca mulatta|Rep: PREDICTED:
hypothetical protein, partial - Macaca mulatta
Length = 180
Score = 33.1 bits (72), Expect = 7.6
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = -3
Query: 645 PPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSS 493
PP A S S P P + L S+S P+T +F P L PP+SS
Sbjct: 35 PPVTAPSSQFPPVSAPSSQFPRSVPLKSVSAPPVTASSSQFPPSLPPPVSS 85
>UniRef50_Q8DM37 Cluster: Tll0286 protein; n=1; Synechococcus
elongatus|Rep: Tll0286 protein - Synechococcus elongatus
(Thermosynechococcus elongatus)
Length = 158
Score = 33.1 bits (72), Expect = 7.6
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = -1
Query: 401 LRALLVVIPRILRSPPPTHPLIEDVVMATNQAIIDYKVKIADNNLVTHKELALKVSSIIG 222
L LL+VIP L P +H +I + A NQ ++ + + DN T + + +
Sbjct: 8 LLLLLLVIPLWLAVSPRSHAMIRTIEEAPNQVVVQSRHPLRDNRGFTWQVILFSRPDQLQ 67
Query: 221 TRVYVFDPSCYFSTP 177
R+ F +F P
Sbjct: 68 LRLVGFPEQYHFRHP 82
>UniRef50_A4TWK0 Cluster: Glutamine synthetase adenylyltransferase;
n=3; Magnetospirillum|Rep: Glutamine synthetase
adenylyltransferase - Magnetospirillum gryphiswaldense
Length = 1137
Score = 33.1 bits (72), Expect = 7.6
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 455 AWLKGFRPLIFK*MMNHKLRALLVVIPRILRSPPPTHPLIEDVVMATNQA 306
A L G P + + + H + VV P PPPT LIED+ A ++A
Sbjct: 728 AELMGNAPKLAEHLARHTTQLDAVVAPSFFEPPPPTERLIEDLNKALSEA 777
>UniRef50_Q55J15 Cluster: Putative uncharacterized protein; n=2;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 744
Score = 33.1 bits (72), Expect = 7.6
Identities = 31/95 (32%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Frame = -3
Query: 666 VSPLCIKPPSPAISXTSTRSSNPRFHTPTTPDL-TSISINPLTPY*KEFAPGLKPPLSSE 490
VSP + PPSPA S T S P + P TS ++P TPY F P +P
Sbjct: 398 VSPHLVSPPSPAPS--QTPSEQPASVETSAPQSDTSFPVSP-TPY---FPPAYRPASVRS 451
Query: 489 ALSAYLTPSSLGMAKGVSPPYFQVNDESQASRLIS 385
++ PS + PPY V+ ES A ++
Sbjct: 452 IPTSTAGPSR--PSASAHPPY--VSSESSAQNSLA 482
>UniRef50_Q12873 Cluster: Chromodomain-helicase-DNA-binding protein 3;
n=124; Eumetazoa|Rep: Chromodomain-helicase-DNA-binding
protein 3 - Homo sapiens (Human)
Length = 2000
Score = 33.1 bits (72), Expect = 7.6
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = -3
Query: 651 IKPPSPAISXTSTRSSNPRFHTPTTPDLTS----ISINPLTPY*KEFAPGLKPPLSSE 490
+ P A S S+R+S+P +PTTP+ ++ + P TP E G++ PL E
Sbjct: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKE 1574
>UniRef50_UPI0000F2185F Cluster: PREDICTED: hypothetical protein; n=2;
Danio rerio|Rep: PREDICTED: hypothetical protein - Danio
rerio
Length = 12610
Score = 32.7 bits (71), Expect = 10.0
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = -3
Query: 666 VSPLCIKPPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTP-Y*KEFAPGLKPPLSSE 490
++P P P+I+ ++ + P PT P ++ P +P AP PP +S
Sbjct: 11828 IAPPTASPTMPSITPSTVPPTAPPTTAPTVPPTLPYTVPPTSPNTVPPIAPTTAPPTTSS 11887
Query: 489 ----ALSAYLTPSSLGMAKGVSPP 430
L + P++L A ++PP
Sbjct: 11888 TVPPTLPYTMPPTALNTATVIAPP 11911
>UniRef50_UPI0000499027 Cluster: hypothetical protein 189.t00012;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 189.t00012 - Entamoeba histolytica HM-1:IMSS
Length = 713
Score = 32.7 bits (71), Expect = 10.0
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = -1
Query: 383 VIPRILRSPPPTHPLIEDVVMATNQAIIDYKVKIADNNLVTHKELALK 240
+I RIL S P + L ED+ N+++++ +++ +N+ T+ LALK
Sbjct: 117 IIMRILNSMPDNYTLTEDIYKKINKSLVE-RLQDTQSNVRTYAVLALK 163
>UniRef50_Q4SSN8 Cluster: Chromosome 15 SCAF14367, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 15 SCAF14367, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 1031
Score = 32.7 bits (71), Expect = 10.0
Identities = 22/73 (30%), Positives = 32/73 (43%)
Frame = -3
Query: 645 PPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEALSAYLTP 466
PPS + S ++ S P TPTT + P P +F+P + PPL + P
Sbjct: 392 PPSFSPSSPASPFSPPDSPTPTTLERPPPD-EPAPPLPPDFSPSISPPLCLHDDAIDEEP 450
Query: 465 SSLGMAKGVSPPY 427
S + G PP+
Sbjct: 451 SGALLGSGSHPPW 463
>UniRef50_Q9F3J4 Cluster: Putative uncharacterized protein SCO5271;
n=1; Streptomyces coelicolor|Rep: Putative
uncharacterized protein SCO5271 - Streptomyces
coelicolor
Length = 1096
Score = 32.7 bits (71), Expect = 10.0
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = -3
Query: 666 VSPLCIKPPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKP--PLSS 493
V+P ++PP+ +S S R+ P P P +++ PL P A G P L
Sbjct: 52 VAPAVVRPPTGPVSLPSDRARPPAPEPPAAPAARRVALYPLPPGDGPGAHGAGPARALPV 111
Query: 492 EALSAYLTPSSLGMAKGVSP 433
+A + P+ L + + + P
Sbjct: 112 GVPAAPVLPAPLELQRALRP 131
>UniRef50_Q5D5G3 Cluster: Phage tail sheath protein; n=1; Wolbachia
endosymbiont of Drosophila mojavensis|Rep: Phage tail
sheath protein - Wolbachia endosymbiont of Drosophila
mojavensis
Length = 296
Score = 32.7 bits (71), Expect = 10.0
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = -1
Query: 395 ALLVVIPRILRSPPPTHPLIEDVVMATNQAIIDYKVK----IADNNLVTHKELALKVSSI 228
+++ V+PRIL +P TH L ED A++ K I + T+ E A+K
Sbjct: 102 SIVHVLPRILIAPQFTHQLPEDGKNPAVAALVPIAEKLRSIIVADGPNTNDEEAIKWRKS 161
Query: 227 IG-TRVYVFDP 198
+G +RVYV DP
Sbjct: 162 VGSSRVYVVDP 172
>UniRef50_A7CRS3 Cluster: Putative uncharacterized protein; n=1;
Opitutaceae bacterium TAV2|Rep: Putative uncharacterized
protein - Opitutaceae bacterium TAV2
Length = 1361
Score = 32.7 bits (71), Expect = 10.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 431 GGETPLAMPSDEGVRYADRASDDNGGFNPGANSF 532
GG TPL+ P + Y D+A + F PG N F
Sbjct: 621 GGHTPLSPPGSDSFDYRDKAPTEAELFGPGKNYF 654
>UniRef50_Q2WBY1 Cluster: Fork head protein; n=1; Platynereis
dumerilii|Rep: Fork head protein - Platynereis dumerilii
(Dumeril's clam worm)
Length = 517
Score = 32.7 bits (71), Expect = 10.0
Identities = 22/62 (35%), Positives = 33/62 (53%)
Frame = -3
Query: 609 SSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEALSAYLTPSSLGMAKGVSPP 430
S+NP TPT+ LTS S++ L+ L PLS + +A+ +GMA G+ P
Sbjct: 398 STNPNVSTPTSHPLTSTSVSELS--------ALTRPLSHDNAAAH-HAVMMGMASGLGGP 448
Query: 429 YF 424
+F
Sbjct: 449 HF 450
>UniRef50_Q5K9V8 Cluster: Fork head homolog XFD-2, putative; n=2;
Filobasidiella neoformans|Rep: Fork head homolog XFD-2,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 916
Score = 32.7 bits (71), Expect = 10.0
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -3
Query: 648 KPPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEALS 481
K P S + ++ PR H TP ++++ TP +PGL PP SS LS
Sbjct: 808 KTPVTRSSAAADKTQTPRLHHRKTPSMSTV-----TPVVFRDSPGLPPPTSSALLS 858
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 744,687,303
Number of Sequences: 1657284
Number of extensions: 15476506
Number of successful extensions: 50812
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 47279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50514
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62146450145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -