Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13e02
         (752 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    27   0.16 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    26   0.37 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   0.37 
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    23   3.5  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    23   3.5  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    22   4.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.6  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   4.6  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   8.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 220  PESTSSIPPATFQLLPSIPYCTTTS 146
            P+++S++ P+T  ++P  P  TTTS
Sbjct: 2286 PDASSTMAPSTTPMVPDKPVTTTTS 2310


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 555 WKWMLSLGWLVYGIGDLMI 611
           +KW+  L W  YG G LMI
Sbjct: 585 FKWLSFLSWFRYGNGALMI 603


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 555 WKWMLSLGWLVYGIGDLMI 611
           +KW+  L W  YG G LMI
Sbjct: 585 FKWLSFLSWFRYGNGALMI 603


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 393 GAKLVIHHSLENK 431
           G + VIHH +ENK
Sbjct: 82  GVRKVIHHLIENK 94


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 393 GAKLVIHHSLENK 431
           G + VIHH +ENK
Sbjct: 82  GVRKVIHHLIENK 94


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 468 PSSLGMAKGVSPPYFQVNDESQASRLIS 385
           P+S+G++  VS P F+V    Q +  IS
Sbjct: 21  PNSVGVSNEVSLPQFKVLGHRQRAMEIS 48


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = -2

Query: 652 HQATLPCDLGYINPIIKSPIPYTNHPRLNIHFHQSPDAVL 533
           H   L      + P  K  +P  NH  LN+   + P A++
Sbjct: 239 HPPHLSSHPAIVTPGPKQELPDLNHKPLNLTIKKMPIAIV 278


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = -2

Query: 652 HQATLPCDLGYINPIIKSPIPYTNHPRLNIHFHQSPDAVL 533
           H   L      + P  K  +P  NH  LN+   + P A++
Sbjct: 131 HPPHLSSHPAIVTPGPKQELPDLNHKPLNLTIKKMPIAIV 170


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 510 KPPLSSEALSAYLTPSSLGMA 448
           K PLSS +  +  TPS L MA
Sbjct: 19  KTPLSSVSYPSMFTPSQLLMA 39


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -3

Query: 645 PPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAP 517
           P  P    +  RSS+P+   PT P +   ++    P  K   P
Sbjct: 79  PQWPFAWGSLXRSSSPQTSAPTGPPIVRCALRKHKPNRKPRTP 121


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,850
Number of Sequences: 336
Number of extensions: 3705
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)