Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13e02
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 32 0.56
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 1.3
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 30 2.3
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225... 29 4.0
02_02_0691 + 12999452-12999820 29 4.0
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.2
11_06_0610 - 25449085-25453284 28 6.9
05_01_0493 + 4113869-4116728,4116859-4117370 28 9.2
02_04_0452 + 23044190-23045227 28 9.2
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 9.2
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 31.9 bits (69), Expect = 0.56
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = -3
Query: 651 IKPPSPAISXTSTR-SSNPR--FHTPTTPDLTSISINPLTP 538
I PPSPA + S+R S +PR F TP T T+ S +P +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSP 65
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -3
Query: 633 AISXTSTRSSNPRFHTPTTP 574
A S T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.9 bits (64), Expect = 2.3
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = -3
Query: 645 PPSPAISXTS-TRSSNPRFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEALSAY 475
P SP+ S TS + S ++PT+P TS +P +P +P P S
Sbjct: 1761 PTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHA 1820
Query: 474 LTPSSLGMAKGVSPPY 427
+PSS SP Y
Sbjct: 1821 YSPSSPNYYSSTSPTY 1836
>12_01_0298 -
2250517-2251235,2251331-2251577,2251615-2252951,
2256029-2256188
Length = 820
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 663 SPLCIKPPSPAISXTSTRSSNPRFHTPTTPD 571
SP + P +PA S +S SS+P TP + D
Sbjct: 326 SPQSVVPSNPAASSSSVASSSPALATPESRD 356
>02_02_0691 + 12999452-12999820
Length = 122
Score = 29.1 bits (62), Expect = 4.0
Identities = 27/84 (32%), Positives = 31/84 (36%)
Frame = +2
Query: 431 GGETPLAMPSDEGVRYADRASDDNGGFNPGANSF*YGVRGLMEMDVKSGVVGVWNRGFDD 610
G E P+ P G R A S GG +P G RG E +S G
Sbjct: 11 GSEAPVVAPKPRGWRMAV-GSIGGGGISPPVARG--GRRGERERGRRSA-----GGGLTG 62
Query: 611 RVDVXEIAGEGGLMHKGETANSNA 682
VD AGE G H G A + A
Sbjct: 63 AVDAFRPAGEAGRQHAGAAAAAEA 86
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 12 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 158
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 6.9
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 645 PPSPAISXTSTRSSNPRFHTPTTPDLTSIS-INPLTPY*KEFAPGLKPPLSSE 490
PP+P +S P HTP+ P+ T S +P TP K +P PP + E
Sbjct: 618 PPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSP---PPPTPE 667
>05_01_0493 + 4113869-4116728,4116859-4117370
Length = 1123
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -1
Query: 182 TPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVS 39
+PP+D LY + + D +L A++ S E+YR + S V+
Sbjct: 753 SPPWDVTLYQKLEIGVSDVARSLTPANVIGHGWSGEVYRASMPSSGVT 800
>02_04_0452 + 23044190-23045227
Length = 345
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -1
Query: 689 ILSHYYWRSRPYASSHPPLRSRXHQPDHQIPDSIHQPP 576
+L H+ +A SH SR H P + P S PP
Sbjct: 169 LLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPTSAPPPP 206
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 380 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 291
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,065,774
Number of Sequences: 37544
Number of extensions: 468384
Number of successful extensions: 1459
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1455
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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