Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13e02
(752 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase prot... 33 1.1
BC110648-1|AAI10649.1| 661|Homo sapiens CHD3 protein protein. 33 1.1
AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein. 33 1.1
BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongatio... 32 1.9
AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription ... 32 1.9
AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongatio... 32 1.9
AC080162-1|AAY14856.1| 635|Homo sapiens unknown protein. 31 3.4
AB007860-1|BAA23696.2| 1022|Homo sapiens KIAA0400 protein. 31 3.4
M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein. 31 5.9
L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein. 31 5.9
U13219-1|AAC50399.1| 354|Homo sapiens FREAC-1 protein. 30 7.8
BC089442-1|AAH89442.1| 354|Homo sapiens forkhead box F1 protein. 30 7.8
BC007890-1|AAH07890.1| 263|Homo sapiens UBAP2 protein protein. 30 7.8
AL354989-1|CAI15298.1| 1119|Homo sapiens ubiquitin associated pr... 30 7.8
AL139113-8|CAI39659.1| 358|Homo sapiens ubiquitin associated pr... 30 7.8
AL139113-5|CAI39657.1| 1119|Homo sapiens ubiquitin associated pr... 30 7.8
AK074884-1|BAC11266.1| 597|Homo sapiens protein ( Homo sapiens ... 30 7.8
AF157327-1|AAF67493.1| 583|Homo sapiens AD-012 protein protein. 30 7.8
AF085343-1|AAC61576.1| 354|Homo sapiens forkhead transcription ... 30 7.8
AB040924-1|BAA96015.1| 757|Homo sapiens KIAA1491 protein protein. 30 7.8
>U91543-1|AAC39923.1| 2000|Homo sapiens zinc-finger helicase protein.
Length = 2000
Score = 33.1 bits (72), Expect = 1.1
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = -3
Query: 651 IKPPSPAISXTSTRSSNPRFHTPTTPDLTS----ISINPLTPY*KEFAPGLKPPLSSE 490
+ P A S S+R+S+P +PTTP+ ++ + P TP E G++ PL E
Sbjct: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKE 1574
>BC110648-1|AAI10649.1| 661|Homo sapiens CHD3 protein protein.
Length = 661
Score = 33.1 bits (72), Expect = 1.1
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = -3
Query: 651 IKPPSPAISXTSTRSSNPRFHTPTTPDLTS----ISINPLTPY*KEFAPGLKPPLSSE 490
+ P A S S+R+S+P +PTTP+ ++ + P TP E G++ PL E
Sbjct: 178 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKE 235
>AF006515-1|AAB87383.1| 1944|Homo sapiens CHD3 protein.
Length = 1944
Score = 33.1 bits (72), Expect = 1.1
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = -3
Query: 651 IKPPSPAISXTSTRSSNPRFHTPTTPDLTS----ISINPLTPY*KEFAPGLKPPLSSE 490
+ P A S S+R+S+P +PTTP+ ++ + P TP E G++ PL E
Sbjct: 1517 LMPDPSADSKRSSRASSPTKTSPTTPEASATNSPCTSKPATPAPSEKGEGIRTPLEKE 1574
>BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongation
regulator 1 protein.
Length = 1077
Score = 32.3 bits (70), Expect = 1.9
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = -3
Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEALSAYLTPS 463
P+PA+S TST SS P T TT TS++ TP ++ P +++ +S
Sbjct: 266 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAP 324
Query: 462 SLGMAKGVSPPYFQ 421
+ + V P+ Q
Sbjct: 325 TATPVQTVPQPHPQ 338
>AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription
factor CA150 protein.
Length = 1098
Score = 32.3 bits (70), Expect = 1.9
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = -3
Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEALSAYLTPS 463
P+PA+S TST SS P T TT TS++ TP ++ P +++ +S
Sbjct: 266 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAR 324
Query: 462 SLGMAKGVSPPYFQ 421
+ + V P+ Q
Sbjct: 325 TATPVQTVPQPHPQ 338
>AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongation
regulator 1 variant protein.
Length = 1081
Score = 32.3 bits (70), Expect = 1.9
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = -3
Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEALSAYLTPS 463
P+PA+S TST SS P T TT TS++ TP ++ P +++ +S
Sbjct: 270 PAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAP 328
Query: 462 SLGMAKGVSPPYFQ 421
+ + V P+ Q
Sbjct: 329 TATPVQTVPQPHPQ 342
>AC080162-1|AAY14856.1| 635|Homo sapiens unknown protein.
Length = 635
Score = 31.5 bits (68), Expect = 3.4
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -3
Query: 609 SSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEALSAYLTPSSLGMAKGVSPP 430
SS+P P P L S NPLTP P K P EALS P+ G+++ PP
Sbjct: 450 SSDPPAVHPPLPPLRVTSTNPLTP--TPPPPVAKTPSVMEALSQPSKPAPPGISQIRPPP 507
>AB007860-1|BAA23696.2| 1022|Homo sapiens KIAA0400 protein.
Length = 1022
Score = 31.5 bits (68), Expect = 3.4
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -3
Query: 609 SSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEALSAYLTPSSLGMAKGVSPP 430
SS+P P P L S NPLTP P K P EALS P+ G+++ PP
Sbjct: 837 SSDPPAVHPPLPPLRVTSTNPLTP--TPPPPVAKTPSVMEALSQPSKPAPPGISQIRPPP 894
>M94131-1|AAA59163.1| 1270|Homo sapiens mucin protein.
Length = 1270
Score = 30.7 bits (66), Expect = 5.9
Identities = 22/79 (27%), Positives = 30/79 (37%)
Frame = -3
Query: 666 VSPLCIKPPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEA 487
+S PP+ S +T S P TP+ P T+ + P T + PP S+
Sbjct: 833 ISTTTTPPPTTTPSPPTTTPSPPTT-TPSPPTTTTTTPPPTTTPSPPMTTPITPPASTTT 891
Query: 486 LSAYLTPSSLGMAKGVSPP 430
L TPS PP
Sbjct: 892 LPPTTTPSPPTTTTTTPPP 910
>L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein.
Length = 5179
Score = 30.7 bits (66), Expect = 5.9
Identities = 22/79 (27%), Positives = 30/79 (37%)
Frame = -3
Query: 666 VSPLCIKPPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEA 487
+S PP+ S +T S P TP+ P T+ + P T + PP S+
Sbjct: 1458 ISTTTTPPPTTTPSPPTTTPSPPTT-TPSPPTTTTTTPPPTTTPSPPMTTPITPPASTTT 1516
Query: 486 LSAYLTPSSLGMAKGVSPP 430
L TPS PP
Sbjct: 1517 LPPTTTPSPPTTTTTTPPP 1535
>U13219-1|AAC50399.1| 354|Homo sapiens FREAC-1 protein.
Length = 354
Score = 30.3 bits (65), Expect = 7.8
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -2
Query: 703 WPPXSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYT-NHPRLNIHFHQSPDAVLEG 527
WPP +S+ + G + Q PC+ NP+ S ++ P L+ + H +P A L+G
Sbjct: 245 WPPSASAALNSGASYIKQQPLSPCNPA-ANPLSGSLSTHSLEQPYLHQNSHNAP-AELQG 302
Query: 526 I 524
I
Sbjct: 303 I 303
>BC089442-1|AAH89442.1| 354|Homo sapiens forkhead box F1 protein.
Length = 354
Score = 30.3 bits (65), Expect = 7.8
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -2
Query: 703 WPPXSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYT-NHPRLNIHFHQSPDAVLEG 527
WPP +S+ + G + Q PC+ NP+ S ++ P L+ + H +P A L+G
Sbjct: 245 WPPSASAALNSGASYIKQQPLSPCNPA-ANPLSGSLSTHSLEQPYLHQNSHNAP-AELQG 302
Query: 526 I 524
I
Sbjct: 303 I 303
>BC007890-1|AAH07890.1| 263|Homo sapiens UBAP2 protein protein.
Length = 263
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 588 TPTTPDLTSISINPLTPY*KE-FAPGLKPPLSSEALSAYLTPSSLGMAKGVSPPYF 424
T PD+T N + K+ F G PP S ++ P + G A G +PP F
Sbjct: 153 TTGLPDMTGSVYNKTQTFDKQGFHAGTPPPFSLPSVLGSTGPLASGAAPGYAPPPF 208
>AL354989-1|CAI15298.1| 1119|Homo sapiens ubiquitin associated protein
2 protein.
Length = 1119
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 588 TPTTPDLTSISINPLTPY*KE-FAPGLKPPLSSEALSAYLTPSSLGMAKGVSPPYF 424
T PD+T N + K+ F G PP S ++ P + G A G +PP F
Sbjct: 1009 TTGLPDMTGSVYNKTQTFDKQGFHAGTPPPFSLPSVLGSTGPLASGAAPGYAPPPF 1064
>AL139113-8|CAI39659.1| 358|Homo sapiens ubiquitin associated
protein 2 protein.
Length = 358
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 588 TPTTPDLTSISINPLTPY*KE-FAPGLKPPLSSEALSAYLTPSSLGMAKGVSPPYF 424
T PD+T N + K+ F G PP S ++ P + G A G +PP F
Sbjct: 248 TTGLPDMTGSVYNKTQTFDKQGFHAGTPPPFSLPSVLGSTGPLASGAAPGYAPPPF 303
>AL139113-5|CAI39657.1| 1119|Homo sapiens ubiquitin associated protein
2 protein.
Length = 1119
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 588 TPTTPDLTSISINPLTPY*KE-FAPGLKPPLSSEALSAYLTPSSLGMAKGVSPPYF 424
T PD+T N + K+ F G PP S ++ P + G A G +PP F
Sbjct: 1009 TTGLPDMTGSVYNKTQTFDKQGFHAGTPPPFSLPSVLGSTGPLASGAAPGYAPPPF 1064
>AK074884-1|BAC11266.1| 597|Homo sapiens protein ( Homo sapiens
cDNA FLJ90403 fis, clone NT2RP2006042, weakly similar to
GLUCOAMYLASE S1/S2 PRECURSOR (EC 3.2.1.3). ).
Length = 597
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 588 TPTTPDLTSISINPLTPY*KE-FAPGLKPPLSSEALSAYLTPSSLGMAKGVSPPYF 424
T PD+T N + K+ F G PP S ++ P + G A G +PP F
Sbjct: 487 TTGLPDMTGSVYNKTQTFDKQGFHAGTPPPFSLPSVLGSTGPLASGAAPGYAPPPF 542
>AF157327-1|AAF67493.1| 583|Homo sapiens AD-012 protein protein.
Length = 583
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 588 TPTTPDLTSISINPLTPY*KE-FAPGLKPPLSSEALSAYLTPSSLGMAKGVSPPYF 424
T PD+T N + K+ F G PP S ++ P + G A G +PP F
Sbjct: 443 TTGLPDMTGSVYNKTQTFDKQGFHAGTPPPFSLPSVLGSTGPLAQGAAPGYAPPPF 498
>AF085343-1|AAC61576.1| 354|Homo sapiens forkhead transcription
factor protein.
Length = 354
Score = 30.3 bits (65), Expect = 7.8
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -2
Query: 703 WPPXSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYT-NHPRLNIHFHQSPDAVLEG 527
WPP +S+ + G + Q PC+ NP+ S ++ P L+ + H +P A L+G
Sbjct: 245 WPPSASAALNSGASYIKQQPLSPCNPA-ANPLSGSLSTHSLEQPYLHQNSHNAP-AELQG 302
Query: 526 I 524
I
Sbjct: 303 I 303
>AB040924-1|BAA96015.1| 757|Homo sapiens KIAA1491 protein protein.
Length = 757
Score = 30.3 bits (65), Expect = 7.8
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -3
Query: 588 TPTTPDLTSISINPLTPY*KE-FAPGLKPPLSSEALSAYLTPSSLGMAKGVSPPYF 424
T PD+T N + K+ F G PP S ++ P + G A G +PP F
Sbjct: 647 TTGLPDMTGSVYNKTQTFDKQGFHAGTPPPFSLPSVLGSTGPLASGAAPGYAPPPF 702
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,649,038
Number of Sequences: 237096
Number of extensions: 2368975
Number of successful extensions: 6116
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6115
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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