Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13e02
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical p...    31   1.2  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z70213-6|CAA94176.1|  167|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical pr...    28   8.2  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical ...    28   8.2  

>Z68220-10|CAA92491.2| 1843|Caenorhabditis elegans Hypothetical
           protein T20D3.11 protein.
          Length = 1843

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 659 PYASSHPPLRSRXHQPDHQIPDS 591
           P +S HPPL S  H  +H  PD+
Sbjct: 66  PTSSHHPPLNSSSHHSNHNYPDT 88


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 666  VSPLCIKPP-SPAISXTSTRSSNPRFHTPTTPDLTSISI 553
            VS  C++PP +P  + ++T ++ P+  T +T   TS +I
Sbjct: 1145 VSMACVRPPTTPTTTTSTTTTTTPKLTTTSTLPSTSTAI 1183


>Z70213-6|CAA94176.1|  167|Caenorhabditis elegans Hypothetical
           protein ZK930.7 protein.
          Length = 167

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 648 KPPSPAISXTSTRSSNPRFHTPTTPDLTSISINPLT 541
           KPP+P+     T   N   + P++P  T  S  PLT
Sbjct: 101 KPPAPSARTPPTIYENLAINAPSSPSATDASSVPLT 136


>U51998-5|AAL00856.2|  648|Caenorhabditis elegans Hypothetical
           protein C12D12.1b protein.
          Length = 648

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -3

Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTP--Y*KEFAPGLKPPLSSEALSAYLT 469
           P+P  + T+T  +NP   TPTT  + +I  +P  P          + P  S+ A +A + 
Sbjct: 490 PTPVPTTTNTPPANPTTATPTT--VGTIGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVN 547

Query: 468 PSSLGMAKGVSP 433
           P+S   A  V P
Sbjct: 548 PTSPTTAPTVPP 559


>U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical
           protein F59A3.2b protein.
          Length = 687

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = -3

Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPP-LSSEALSAYLTP 466
           P+P I     R   PR     TP L  + I+P+     +F P + PP + S    A   P
Sbjct: 514 PTPPIERHILR---PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNP 570

Query: 465 SSLGMAKGVSPPYFQVNDESQASRLISR 382
           ++L      S P   V ++      ++R
Sbjct: 571 TNLYPTPPSSLPNTYVPNQESFDESVNR 598


>U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical
           protein F59A3.2a protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
 Frame = -3

Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPP-LSSEALSAYLTP 466
           P+P I     R   PR     TP L  + I+P+     +F P + PP + S    A   P
Sbjct: 514 PTPPIERHILR---PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNP 570

Query: 465 SSLGMAKGVSPPYFQVNDESQASRLISR 382
           ++L      S P   V ++      ++R
Sbjct: 571 TNLYPTPPSSLPNTYVPNQESFDESVNR 598


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 642 PSPAISXTSTRSSNPRFHTPTTPDLTSISINPLTPY 535
           P+P  + T+T  +NP   TPTT   TS   N ++P+
Sbjct: 490 PTPVPTTTNTPPANPTTATPTTVG-TSKQTNTISPH 524


>AC006761-2|AAF60547.1|  402|Caenorhabditis elegans Hypothetical
           protein Y41G9A.5 protein.
          Length = 402

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 651 IKPPSPAISXTSTRSSNPRFHTPTTPD-LTSISINPLTP 538
           +   SPAI  T+T +++P+  T  TP+ +T++    + P
Sbjct: 266 VSSDSPAIESTTTTTASPKTSTTLTPEPITTVPAKDVKP 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,490,377
Number of Sequences: 27780
Number of extensions: 342679
Number of successful extensions: 1192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)