Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13e01
         (743 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2469|AAS64704.1| 1853|Drosophila melanogaster CG32972-P...    33   0.54 
AE013599-545|AAF59166.2|  922|Drosophila melanogaster CG14766-PA...    32   0.95 
BT024254-1|ABC86316.1|  199|Drosophila melanogaster IP15861p pro...    31   1.7  
AE014298-1416|AAF46559.1| 1161|Drosophila melanogaster CG15311-P...    31   1.7  
BT025830-1|ABF85730.1|  258|Drosophila melanogaster IP09124p pro...    31   2.2  
AE014296-3423|AAF51643.2| 1959|Drosophila melanogaster CG11451-P...    30   2.9  
BT022415-1|AAY54831.1|  189|Drosophila melanogaster IP08052p pro...    29   8.8  
AY928610-1|AAX28843.1|  377|Drosophila melanogaster gag protein ...    29   8.8  
AJ001516-2|CAC79667.1|  373|Drosophila melanogaster gag protein ...    29   8.8  
AE014297-718|AAF54205.4|  227|Drosophila melanogaster CG18228-PA...    29   8.8  

>AE014134-2469|AAS64704.1| 1853|Drosophila melanogaster CG32972-PA,
            isoform A protein.
          Length = 1853

 Score = 32.7 bits (71), Expect = 0.54
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = -2

Query: 235  SSIYDEVLTRDFITKNMAKFKTVALKLPV-APSTTEYVPTSISGSKKRKNSVPAKQRSSI 59
            +SI D   T+D  T   +      LK    AP+TT+ +PT+ +     K        SS 
Sbjct: 1553 TSISDSTTTKDITTTAASPTTAEDLKTTTPAPTTTDNIPTTTNAPTTTKEITTTTSASST 1612

Query: 58   KNRRNTTAAPTLLMVSDNT 2
                 TTA  T   ++  T
Sbjct: 1613 DETTTTTAPTTTKDITTTT 1631


>AE013599-545|AAF59166.2|  922|Drosophila melanogaster CG14766-PA
            protein.
          Length = 922

 Score = 31.9 bits (69), Expect = 0.95
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -2

Query: 382  PASKKRQTAVLTNANLA--ELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDEVLT 209
            P S+KR+   +T  N +  E K        LYS +  +++ET  N  +PL    Y   L 
Sbjct: 827  PVSEKRELISITKPNQSDCEAKHRSHKDVNLYSRYPKIISETLENLTSPLRFENYTRELL 886

Query: 208  RDFITKNMAK 179
            + +   ++ K
Sbjct: 887  KAYKALDVTK 896


>BT024254-1|ABC86316.1|  199|Drosophila melanogaster IP15861p
           protein.
          Length = 199

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
 Frame = -2

Query: 715 NSNMDQXIAIVNFLEKKNINYILNVMPVM--QDERKMSKRKKK 593
           N N ++ I  ++++ K N+N ++   P M  +D++K++K+KKK
Sbjct: 157 NFNNNEKIMQLSYITKSNVNSVIK-FPAMSVKDKKKLNKKKKK 198


>AE014298-1416|AAF46559.1| 1161|Drosophila melanogaster CG15311-PA
           protein.
          Length = 1161

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 169 VALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPT 26
           +A K PVA STT  VPT+++ SK    S  +   ++      T  +P+
Sbjct: 340 LAKKYPVATSTTTKVPTTLATSKTTSRSSSSSTTTTTMATSTTATSPS 387


>BT025830-1|ABF85730.1|  258|Drosophila melanogaster IP09124p
           protein.
          Length = 258

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = -2

Query: 715 NSNMDQXIAIVNFLEKKNINYILNVMPVM--QDERKMSKRKKK 593
           N N ++ I  ++++ K N+N ++   P M  +D++K+ K+KKK
Sbjct: 217 NFNNNEKIMQLSYITKSNVNSVIK-FPAMSVKDKKKLKKKKKK 258


>AE014296-3423|AAF51643.2| 1959|Drosophila melanogaster CG11451-PA
           protein.
          Length = 1959

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 148 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLM 17
           AP  T Y PT  S  +  ++S+  + R S KN+  T A  +L M
Sbjct: 227 APVATLYPPTQQSLMELEEDSIVREMRESTKNQTKTPAQKSLFM 270


>BT022415-1|AAY54831.1|  189|Drosophila melanogaster IP08052p
           protein.
          Length = 189

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -2

Query: 688 IVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIK-QPEWPSSPA 512
           I+N  +K+ +N++       +D+  + K  +  ++NN+  L  SWYT ++  P+ P +  
Sbjct: 127 ILNLWQKEAVNFV-----GQRDDVIVVKGARAQLHNNEMKLNASWYTNMQINPDIPDATG 181

Query: 511 MWDLVKN 491
           M +   N
Sbjct: 182 MLEWYNN 188


>AY928610-1|AAX28843.1|  377|Drosophila melanogaster gag protein
           protein.
          Length = 377

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -2

Query: 301 KLYSEFYSLL-NETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKT-VALKLPVAPSTTE 131
           K+ S+ +S+L N   NN V      +Y+EV    F+T      KT V +K   +PST E
Sbjct: 197 KVRSQLFSILKNSEHNNTVVDAKKVVYNEVCLNAFMTGLKEPLKTFVRIK---SPSTLE 252


>AJ001516-2|CAC79667.1|  373|Drosophila melanogaster gag protein
           protein.
          Length = 373

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -2

Query: 301 KLYSEFYSLL-NETFNNNVAPLLSSIYDEVLTRDFITKNMAKFKT-VALKLPVAPSTTE 131
           K+ S+ +S+L N   NN V      +Y+EV    F+T      KT V +K   +PST E
Sbjct: 197 KVRSQLFSILKNSEHNNTVVDAKKVVYNEVCLNAFMTGLKEPLKTFVRIK---SPSTLE 252


>AE014297-718|AAF54205.4|  227|Drosophila melanogaster CG18228-PA
           protein.
          Length = 227

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = -2

Query: 688 IVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIK-QPEWPSSPA 512
           I+N  +K+ +N++       +D+  + K  +  ++NN+  L  SWYT ++  P+ P +  
Sbjct: 165 ILNLWQKEAVNFV-----GQRDDVIVVKGARAQLHNNEMKLNASWYTNMQINPDIPDATG 219

Query: 511 MWDLVKN 491
           M +   N
Sbjct: 220 MLEWYNN 226


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,771,732
Number of Sequences: 53049
Number of extensions: 690225
Number of successful extensions: 2233
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2221
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)