Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13d22
(769 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 42 5e-04
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 42 5e-04
Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical p... 35 0.055
Z68215-11|CAH60786.1| 1301|Caenorhabditis elegans Hypothetical p... 35 0.055
Z68215-6|CAB54213.2| 1304|Caenorhabditis elegans Hypothetical pr... 35 0.055
Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical pr... 35 0.055
Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical pr... 35 0.055
AF099920-8|AAK29848.1| 402|Caenorhabditis elegans Hypothetical ... 34 0.13
U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily ass... 33 0.17
U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily ass... 33 0.17
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass... 33 0.17
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 31 0.90
AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical ... 31 0.90
AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical ... 31 0.90
AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical ... 31 0.90
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 31 0.90
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 31 0.90
Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical pr... 30 1.6
U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical p... 30 1.6
AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protei... 30 1.6
Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical pr... 30 2.1
U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated p... 30 2.1
U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated p... 30 2.1
U00035-2|AAA50644.2| 413|Caenorhabditis elegans Hypothetical pr... 30 2.1
AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interact... 30 2.1
Z81475-8|CAL90887.1| 676|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z81475-7|CAB03914.2| 653|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z46795-7|CAO82048.1| 2371|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z46795-4|CAM82783.2| 2184|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z46792-9|CAO82020.1| 2371|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z46792-6|CAM82812.2| 2184|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z46792-3|CAA86765.2| 131|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical pr... 28 6.4
DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein. 28 6.4
AC006617-9|AAF39767.1| 409|Caenorhabditis elegans Hypothetical ... 28 6.4
>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
C10C6.1 protein.
Length = 1565
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = -1
Query: 415 IQHGILVWKVIIGSPAFNGGLQPGDIVVKINGKPVHNTT 299
I+H +V V+ GSPAF+ LQ D++ +NG PVHN T
Sbjct: 1199 IEH--IVTAVVEGSPAFHANLQAEDMITHVNGHPVHNLT 1235
>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
protein.
Length = 1565
Score = 41.9 bits (94), Expect = 5e-04
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = -1
Query: 415 IQHGILVWKVIIGSPAFNGGLQPGDIVVKINGKPVHNTT 299
I+H +V V+ GSPAF+ LQ D++ +NG PVHN T
Sbjct: 1199 IEH--IVTAVVEGSPAFHANLQAEDMITHVNGHPVHNLT 1235
>Z68215-15|CAN86580.1| 1544|Caenorhabditis elegans Hypothetical
protein C53B4.4e protein.
Length = 1544
Score = 35.1 bits (77), Expect = 0.055
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 376 SPAFNGGLQPGDIVVKINGKPVHNTTDIYNILESTTGSLKIDAVRGRQQIN 224
S A +PGD++V IN P+ + L+STTG L + R I+
Sbjct: 541 SLADKAAFKPGDVLVAINNVPIRSERQATRFLQSTTGDLTVLVERSLDDID 591
>Z68215-11|CAH60786.1| 1301|Caenorhabditis elegans Hypothetical
protein C53B4.4d protein.
Length = 1301
Score = 35.1 bits (77), Expect = 0.055
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 376 SPAFNGGLQPGDIVVKINGKPVHNTTDIYNILESTTGSLKIDAVRGRQQIN 224
S A +PGD++V IN P+ + L+STTG L + R I+
Sbjct: 370 SLADKAAFKPGDVLVAINNVPIRSERQATRFLQSTTGDLTVLVERSLDDID 420
>Z68215-6|CAB54213.2| 1304|Caenorhabditis elegans Hypothetical
protein C53B4.4c protein.
Length = 1304
Score = 35.1 bits (77), Expect = 0.055
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 376 SPAFNGGLQPGDIVVKINGKPVHNTTDIYNILESTTGSLKIDAVRGRQQIN 224
S A +PGD++V IN P+ + L+STTG L + R I+
Sbjct: 370 SLADKAAFKPGDVLVAINNVPIRSERQATRFLQSTTGDLTVLVERSLDDID 420
>Z68215-5|CAA92456.1| 1586|Caenorhabditis elegans Hypothetical
protein C53B4.4b protein.
Length = 1586
Score = 35.1 bits (77), Expect = 0.055
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 376 SPAFNGGLQPGDIVVKINGKPVHNTTDIYNILESTTGSLKIDAVRGRQQIN 224
S A +PGD++V IN P+ + L+STTG L + R I+
Sbjct: 541 SLADKAAFKPGDVLVAINNVPIRSERQATRFLQSTTGDLTVLVERSLDDID 591
>Z68215-4|CAA92457.1| 1584|Caenorhabditis elegans Hypothetical
protein C53B4.4a protein.
Length = 1584
Score = 35.1 bits (77), Expect = 0.055
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 376 SPAFNGGLQPGDIVVKINGKPVHNTTDIYNILESTTGSLKIDAVRGRQQIN 224
S A +PGD++V IN P+ + L+STTG L + R I+
Sbjct: 541 SLADKAAFKPGDVLVAINNVPIRSERQATRFLQSTTGDLTVLVERSLDDID 591
>AF099920-8|AAK29848.1| 402|Caenorhabditis elegans Hypothetical
protein H06H21.9 protein.
Length = 402
Score = 33.9 bits (74), Expect = 0.13
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = -1
Query: 412 QHGILVWKVIIGSPAFNGGLQPGDIVVKINGKPV-HNTTDIYNILESTTGSLKIDA 248
+HG LV +V SP F G + PGDI++++NG V + + ++ TTG + +
Sbjct: 78 RHG-LVTRVHYASP-FKGAILPGDIILQVNGTTVSFDEKQLTEHVDETTGGASLQS 131
>U00045-3|AAL02502.1| 868|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform b protein.
Length = 868
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -1
Query: 403 ILVWKVIIGSPAFNGGLQPGDIVVKINGK 317
++V VI+GSPA GL GD ++ ING+
Sbjct: 394 VIVESVIVGSPADKAGLLVGDTILSINGE 422
>U00045-2|AAL02501.1| 1004|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform a protein.
Length = 1004
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -1
Query: 403 ILVWKVIIGSPAFNGGLQPGDIVVKINGK 317
++V VI+GSPA GL GD ++ ING+
Sbjct: 349 VIVESVIVGSPADKAGLLVGDTILSINGE 377
>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform c protein.
Length = 1099
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -1
Query: 403 ILVWKVIIGSPAFNGGLQPGDIVVKINGK 317
++V VI+GSPA GL GD ++ ING+
Sbjct: 444 VIVESVIVGSPADKAGLLVGDTILSINGE 472
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -1
Query: 418 DIQHGILVWKVIIGSP-AFNGGLQPGDIVVKING 320
D Q GI V KV+ G+P A +G L+ GD ++ +NG
Sbjct: 994 DRQMGIYVKKVVEGTPAAHDGRLETGDQLLSVNG 1027
>AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical
protein W03F11.6b protein.
Length = 678
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -1
Query: 418 DIQHGILVWKVIIGSP-AFNGGLQPGDIVVKING 320
D Q GI V KV+ G+P A +G L+ GD ++ +NG
Sbjct: 12 DRQMGIYVKKVVEGTPAAHDGRLETGDQLLSVNG 45
>AF003135-4|AAO38590.1| 1039|Caenorhabditis elegans Hypothetical
protein W03F11.6e protein.
Length = 1039
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -1
Query: 418 DIQHGILVWKVIIGSP-AFNGGLQPGDIVVKING 320
D Q GI V KV+ G+P A +G L+ GD ++ +NG
Sbjct: 992 DRQMGIYVKKVVEGTPAAHDGRLETGDQLLSVNG 1025
>AF003135-3|AAO38589.1| 1184|Caenorhabditis elegans Hypothetical
protein W03F11.6d protein.
Length = 1184
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -1
Query: 418 DIQHGILVWKVIIGSP-AFNGGLQPGDIVVKING 320
D Q GI V KV+ G+P A +G L+ GD ++ +NG
Sbjct: 992 DRQMGIYVKKVVEGTPAAHDGRLETGDQLLSVNG 1025
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -1
Query: 418 DIQHGILVWKVIIGSP-AFNGGLQPGDIVVKING 320
D Q GI V KV+ G+P A +G L+ GD ++ +NG
Sbjct: 992 DRQMGIYVKKVVEGTPAAHDGRLETGDQLLSVNG 1025
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = -1
Query: 418 DIQHGILVWKVIIGSP-AFNGGLQPGDIVVKING 320
D Q GI V KV+ G+P A +G L+ GD ++ +NG
Sbjct: 992 DRQMGIYVKKVVEGTPAAHDGRLETGDQLLSVNG 1025
>Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical protein
C09H6.2b protein.
Length = 954
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Frame = -1
Query: 487 ITMLSLTPSILMELKMRNPE----MPTDIQHGILVWKVIIGSPAFNGGLQPGDIVVKING 320
+T++S P ++E+++R P+ + +Q+G++ ++ G A GG++ G +++ING
Sbjct: 854 MTVVSTPP--VVEVRIRRPDTKYQLGFSVQNGVIC-SLLRGGIAERGGIRVGHRIIEING 910
Query: 319 KPVHNTTD--IYNILESTTGSL 260
V I N+L + G +
Sbjct: 911 TSVVAVAHDRIVNMLATAVGEI 932
>Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical protein
C09H6.2a protein.
Length = 982
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Frame = -1
Query: 487 ITMLSLTPSILMELKMRNPE----MPTDIQHGILVWKVIIGSPAFNGGLQPGDIVVKING 320
+T++S P ++E+++R P+ + +Q+G++ ++ G A GG++ G +++ING
Sbjct: 882 MTVVSTPP--VVEVRIRRPDTKYQLGFSVQNGVIC-SLLRGGIAERGGIRVGHRIIEING 938
Query: 319 KPVHNTTD--IYNILESTTGSL 260
V I N+L + G +
Sbjct: 939 TSVVAVAHDRIVNMLATAVGEI 960
>U80445-11|AAB37801.2| 479|Caenorhabditis elegans Hypothetical
protein C50F2.8 protein.
Length = 479
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -1
Query: 364 NGGLQPGDIVVKINGKPVHNTTDIYNI 284
N L+PGD++ +++GK V+ DI N+
Sbjct: 166 NYDLKPGDVITQVDGKDVYFRADIENL 192
>AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protein
protein.
Length = 954
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Frame = -1
Query: 487 ITMLSLTPSILMELKMRNPE----MPTDIQHGILVWKVIIGSPAFNGGLQPGDIVVKING 320
+T++S P ++E+++R P+ + +Q+G++ ++ G A GG++ G +++ING
Sbjct: 854 MTVVSTPP--VVEVRIRRPDTKYQLGFSVQNGVIC-SLLRGGIAERGGIRVGHRIIEING 910
Query: 319 KPVHNTTD--IYNILESTTGSL 260
V I N+L + G +
Sbjct: 911 TSVVAVAHDRIVNMLATAVGEI 932
>Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical
protein K01A6.2 protein.
Length = 1092
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -1
Query: 403 ILVWKVIIGSPAF-NGGLQPGDIVVKINGK 317
I V V+ G PA NG L+ GDI+V++NG+
Sbjct: 489 IQVKSVLSGGPAAANGVLRSGDILVRVNGR 518
>U41035-2|AAM69088.1| 1371|Caenorhabditis elegans Uncoordinated
protein 10, isoform b protein.
Length = 1371
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -1
Query: 406 GILVWKVIIGSPAFN-GGLQPGDIVVKINGKPVHNTT--DIYNILESTTGSLKIDAVRGR 236
G + +V GS A G L+PGD VV+ NG+ + N T +Y+ + ++ ++ + R
Sbjct: 674 GAFITQVKPGSVADTIGRLRPGDEVVEWNGQSLQNATYEQVYDSIAASRYDTSVELIVSR 733
Query: 235 QQI 227
I
Sbjct: 734 SAI 736
>U41035-1|AAB37028.2| 1563|Caenorhabditis elegans Uncoordinated
protein 10, isoform a protein.
Length = 1563
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -1
Query: 406 GILVWKVIIGSPAFN-GGLQPGDIVVKINGKPVHNTT--DIYNILESTTGSLKIDAVRGR 236
G + +V GS A G L+PGD VV+ NG+ + N T +Y+ + ++ ++ + R
Sbjct: 674 GAFITQVKPGSVADTIGRLRPGDEVVEWNGQSLQNATYEQVYDSIAASRYDTSVELIVSR 733
Query: 235 QQI 227
I
Sbjct: 734 SAI 736
>U00035-2|AAA50644.2| 413|Caenorhabditis elegans Hypothetical
protein R01H2.2 protein.
Length = 413
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 673 TDAPITFGNSGGPLVNLDGEAIGINS 596
+D P+ G+ GGPLV DG IG S
Sbjct: 243 SDRPLAKGDRGGPLVTDDGVLIGFGS 268
>AF257062-1|AAK49331.1| 1563|Caenorhabditis elegans Rab3-interacting
molecule UNC-10 protein.
Length = 1563
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -1
Query: 406 GILVWKVIIGSPAFN-GGLQPGDIVVKINGKPVHNTT--DIYNILESTTGSLKIDAVRGR 236
G + +V GS A G L+PGD VV+ NG+ + N T +Y+ + ++ ++ + R
Sbjct: 674 GAFITQVKPGSVADTIGRLRPGDEVVEWNGQSLQNATYEQVYDSIAASRYDTSVELIVSR 733
Query: 235 QQI 227
I
Sbjct: 734 SAI 736
>Z81475-8|CAL90887.1| 676|Caenorhabditis elegans Hypothetical
protein C24H11.8b protein.
Length = 676
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 365 QRGSTTRRHCSQNKRKTSSQYNRYIQHSRKYD 270
QR +T RRH S N+ +T S + ++ +YD
Sbjct: 227 QRYNTVRRHASLNRSRTRSNDTKSVRSFNRYD 258
>Z81475-7|CAB03914.2| 653|Caenorhabditis elegans Hypothetical
protein C24H11.8a protein.
Length = 653
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 365 QRGSTTRRHCSQNKRKTSSQYNRYIQHSRKYD 270
QR +T RRH S N+ +T S + ++ +YD
Sbjct: 227 QRYNTVRRHASLNRSRTRSNDTKSVRSFNRYD 258
>Z46795-7|CAO82048.1| 2371|Caenorhabditis elegans Hypothetical protein
C52A11.4f protein.
Length = 2371
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 379 GSPAFNGGLQPGDIVVKINGKPVHNTT 299
G+ A +G L+PGD V+++NG + T
Sbjct: 1974 GAAAHDGRLKPGDQVLEVNGTSLRGVT 2000
>Z46795-5|CAA86789.5| 2393|Caenorhabditis elegans Hypothetical protein
C52A11.4a protein.
Length = 2393
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 379 GSPAFNGGLQPGDIVVKINGKPVHNTT 299
G+ A +G L+PGD V+++NG + T
Sbjct: 1996 GAAAHDGRLKPGDQVLEVNGTSLRGVT 2022
>Z46795-4|CAM82783.2| 2184|Caenorhabditis elegans Hypothetical protein
C52A11.4e protein.
Length = 2184
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 379 GSPAFNGGLQPGDIVVKINGKPVHNTT 299
G+ A +G L+PGD V+++NG + T
Sbjct: 1787 GAAAHDGRLKPGDQVLEVNGTSLRGVT 1813
>Z46795-3|CAM82782.2| 2491|Caenorhabditis elegans Hypothetical protein
C52A11.4d protein.
Length = 2491
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 379 GSPAFNGGLQPGDIVVKINGKPVHNTT 299
G+ A +G L+PGD V+++NG + T
Sbjct: 2094 GAAAHDGRLKPGDQVLEVNGTSLRGVT 2120
>Z46792-9|CAO82020.1| 2371|Caenorhabditis elegans Hypothetical protein
C52A11.4f protein.
Length = 2371
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 379 GSPAFNGGLQPGDIVVKINGKPVHNTT 299
G+ A +G L+PGD V+++NG + T
Sbjct: 1974 GAAAHDGRLKPGDQVLEVNGTSLRGVT 2000
>Z46792-7|CAA86769.5| 2393|Caenorhabditis elegans Hypothetical protein
C52A11.4a protein.
Length = 2393
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 379 GSPAFNGGLQPGDIVVKINGKPVHNTT 299
G+ A +G L+PGD V+++NG + T
Sbjct: 1996 GAAAHDGRLKPGDQVLEVNGTSLRGVT 2022
>Z46792-6|CAM82812.2| 2184|Caenorhabditis elegans Hypothetical protein
C52A11.4e protein.
Length = 2184
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 379 GSPAFNGGLQPGDIVVKINGKPVHNTT 299
G+ A +G L+PGD V+++NG + T
Sbjct: 1787 GAAAHDGRLKPGDQVLEVNGTSLRGVT 1813
>Z46792-5|CAM82811.2| 2491|Caenorhabditis elegans Hypothetical protein
C52A11.4d protein.
Length = 2491
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 379 GSPAFNGGLQPGDIVVKINGKPVHNTT 299
G+ A +G L+PGD V+++NG + T
Sbjct: 2094 GAAAHDGRLKPGDQVLEVNGTSLRGVT 2120
>Z46792-3|CAA86765.2| 131|Caenorhabditis elegans Hypothetical
protein C52A11.3 protein.
Length = 131
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = -1
Query: 406 GILVWKVIIGSPAFNGGLQPGDIVVKINGKPVHNTTDIYNILESTTGSLKIDAVR 242
GIL+ V+ GS A L+ GD ++ +NG+P+ + + ++++ L + R
Sbjct: 72 GILITTVVPGSVAAEK-LKVGDRILAVNGRPILDQRSVVKSVKASGQRLYLQIAR 125
>Z46792-2|CAL44970.3| 2202|Caenorhabditis elegans Hypothetical protein
C52A11.4c protein.
Length = 2202
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 379 GSPAFNGGLQPGDIVVKINGKPVHNTT 299
G+ A +G L+PGD V+++NG + T
Sbjct: 1805 GAAAHDGRLKPGDQVLEVNGTSLRGVT 1831
>DQ823041-1|ABH03415.1| 2166|Caenorhabditis elegans MPZ-1 protein.
Length = 2166
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -1
Query: 379 GSPAFNGGLQPGDIVVKINGKPVHNTT 299
G+ A +G L+PGD V+++NG + T
Sbjct: 1765 GAAAHDGRLKPGDQVLEVNGTSLRGVT 1791
>AC006617-9|AAF39767.1| 409|Caenorhabditis elegans Hypothetical
protein C39B5.2 protein.
Length = 409
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 144 IIN*AVCSPKKKTRRRLYQCNSGTMVRFICWRPLTASIFKL 266
+ N +VCSPK K+ Q ++ M++ IC R + K+
Sbjct: 56 VFNFSVCSPKTKSTTENIQKDAFIMMKHICQRTDAGELHKI 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,342,103
Number of Sequences: 27780
Number of extensions: 411852
Number of successful extensions: 1215
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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