Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13d20
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0548 + 4099386-4099847,4100435-4101316 246 1e-65
03_01_0547 + 4093196-4093657,4094267-4095148 246 1e-65
03_01_0544 + 4082528-4082989,4083585-4084466 246 1e-65
03_01_0543 + 4076981-4077442,4078145-4079026 246 1e-65
04_03_0107 + 11328267-11328276,11329059-11329170,11329862-113299... 63 2e-10
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 60 2e-09
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 60 2e-09
04_04_1593 - 34661670-34661798,34661882-34661989,34662129-346623... 54 1e-07
02_03_0105 - 15254959-15255216,15256235-15256299,15257080-152572... 50 2e-06
02_04_0462 + 23131433-23132836 40 0.001
03_06_0699 - 35612919-35612989,35613079-35613319,35613506-356135... 34 0.097
11_06_0516 + 24502645-24504507 29 3.7
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 29 4.8
03_05_0824 + 27980191-27980243,27980633-27980671,27980974-279820... 29 4.8
07_03_0634 + 20125242-20125688 28 6.4
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 28 6.4
01_06_0191 - 27334412-27335155 28 8.5
>03_01_0548 + 4099386-4099847,4100435-4101316
Length = 447
Score = 246 bits (603), Expect = 1e-65
Identities = 110/152 (72%), Positives = 133/152 (87%)
Frame = -3
Query: 712 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 533
KSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI++NH
Sbjct: 278 KSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNH 337
Query: 532 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 353
PGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP
Sbjct: 338 PGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKP 397
Query: 352 LCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 398 MVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0547 + 4093196-4093657,4094267-4095148
Length = 447
Score = 246 bits (603), Expect = 1e-65
Identities = 110/152 (72%), Positives = 133/152 (87%)
Frame = -3
Query: 712 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 533
KSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI++NH
Sbjct: 278 KSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNH 337
Query: 532 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 353
PGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP
Sbjct: 338 PGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKP 397
Query: 352 LCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 398 MVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0544 + 4082528-4082989,4083585-4084466
Length = 447
Score = 246 bits (603), Expect = 1e-65
Identities = 110/152 (72%), Positives = 133/152 (87%)
Frame = -3
Query: 712 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 533
KSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI++NH
Sbjct: 278 KSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNH 337
Query: 532 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 353
PGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP
Sbjct: 338 PGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKP 397
Query: 352 LCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 398 MVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>03_01_0543 + 4076981-4077442,4078145-4079026
Length = 447
Score = 246 bits (603), Expect = 1e-65
Identities = 110/152 (72%), Positives = 133/152 (87%)
Frame = -3
Query: 712 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 533
KSVEMHHEALQEA+PGDNVGFNVKNV+VK+L+RGYVA +SK++P K AA FT+QVI++NH
Sbjct: 278 KSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNH 337
Query: 532 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 353
PGQI NGY PVLDCHT+HIA KFAE+ K+DRR+GK E PK +K+GDA +V ++P+KP
Sbjct: 338 PGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKP 397
Query: 352 LCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
+ VE+F E+PPLGRFAVRDMRQTVAVGVIK V
Sbjct: 398 MVVETFSEYPPLGRFAVRDMRQTVAVGVIKNV 429
>04_03_0107 +
11328267-11328276,11329059-11329170,11329862-11329907,
11330185-11330256,11332292-11332303,11332880-11332942,
11333038-11333192,11333303-11333367,11334645-11334795,
11335230-11335335,11335440-11335575,11336310-11336374,
11337003-11337188,11337298-11337399
Length = 426
Score = 62.9 bits (146), Expect = 2e-10
Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Frame = -3
Query: 706 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN--H 533
+ + ++ A P +NV + + +++ G+V S NP +F AQ+ +L
Sbjct: 272 ISLDEHKVRRAGPAENVRVKLSGIEDEDIMAGFVLS-SIGNPVGAVTEFNAQLQILELLD 330
Query: 532 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-------IKSGDAAIV 374
+ GY VL H+ C+ ++ E++D + K + K +K+G +
Sbjct: 331 NAIFTAGYKAVLHIHSVVEECEIVDLIEEIDMKKKKEADPKKKKPKRKPLFVKNGAVVVC 390
Query: 373 NLVPSKPLCVESFQEFPPLGRFAVR 299
+ + +C+E+F +FP LGRF +R
Sbjct: 391 RIQVNNLICIENFSDFPQLGRFTLR 415
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 59.7 bits (138), Expect = 2e-09
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 3/152 (1%)
Frame = -3
Query: 712 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP--PKGAADFTA-QVIV 542
KS+E + A GDNV +++ + +L + G NP P ++F +V+V
Sbjct: 525 KSIERDSNSCDIARAGDNVAVSLQGIDGSKL----ILGGILCNPGFPVPVSNFLELRVLV 580
Query: 541 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVP 362
L+ I GY H A + +I +D+ GK ++ P+ +KS A+V +
Sbjct: 581 LDVTIPILIGYQVEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTL 639
Query: 361 SKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 266
P+CV+ F + LGR +R T+AVGV+
Sbjct: 640 DAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 59.7 bits (138), Expect = 2e-09
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 3/152 (1%)
Frame = -3
Query: 712 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNP--PKGAADFTA-QVIV 542
KS+E + A GDNV +++ + +L + G NP P ++F +V+V
Sbjct: 525 KSIERDSNSCDIARAGDNVAVSLQGIDGSKL----ILGGILCNPGFPVPVSNFLELRVLV 580
Query: 541 LNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVP 362
L+ I GY H A + +I +D+ GK ++ P+ +KS A+V +
Sbjct: 581 LDVTIPILIGYQVEFHIHHVKEAARVTKIVALLDK-AGKPSKTAPRFLKSKQNAVVQVTL 639
Query: 361 SKPLCVESFQEFPPLGRFAVRDMRQTVAVGVI 266
P+CV+ F + LGR +R T+AVGV+
Sbjct: 640 DAPVCVQEFSKCRALGRAFLRSSGSTIAVGVV 671
>04_04_1593 -
34661670-34661798,34661882-34661989,34662129-34662368,
34662614-34662782,34662872-34663362,34663681-34663991,
34664396-34664473,34665034-34665228,34665363-34665524,
34665759-34665840
Length = 654
Score = 54.0 bits (124), Expect = 1e-07
Identities = 36/152 (23%), Positives = 70/152 (46%)
Frame = -3
Query: 712 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 533
K++E + + A GDNV ++ + + G V + P A+ +++VL+
Sbjct: 509 KTIERNSSSCNLARAGDNVAIGLQGIDPSHIMPGGVICHP-DYPVSVASCLELKILVLDI 567
Query: 532 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 353
I G ++ +I ++++TGK+++ P+ + S A++ + K
Sbjct: 568 TVPILVGL---------QVSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKE 618
Query: 352 LCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
+CVE F LGR +R T+AVG++ V
Sbjct: 619 VCVEEFSNLKALGRVFLRSQGNTIAVGIVSRV 650
>02_03_0105 -
15254959-15255216,15256235-15256299,15257080-15257215,
15257314-15257419,15257642-15257792,15258817-15258881,
15258980-15259134,15259219-15259281,15259846-15259917,
15260364-15260408
Length = 371
Score = 50.0 bits (114), Expect = 2e-06
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Frame = -3
Query: 709 SVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN-- 536
SV + ++ A PG+NV + + ++ G+V K NP ++F AQ+ +L
Sbjct: 226 SVHCDEDRVRSAAPGENVRVKLSGIEEDDITAGFVLSSIK-NPVSAISEFRAQLQILELL 284
Query: 535 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIK 395
+ GY VL H+ C+ E+ E++D + K ++ K K
Sbjct: 285 DNAIFTAGYKAVLHIHSVVEECEIVELIEEIDLKRRKEGDIKKKKSK 331
>02_04_0462 + 23131433-23132836
Length = 467
Score = 40.3 bits (90), Expect = 0.001
Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 3/153 (1%)
Frame = -3
Query: 706 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 527
VEM + + +A+ GDNVG ++ + ++ RG V + P D V+ + G
Sbjct: 327 VEMFQKTMDDAMAGDNVGLLLRGMQKDDIERGMVLAKPASITPHTKFDAVVYVLKKDEGG 386
Query: 526 QIS---NGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSK 356
+ S GY P T + +I D K GD + + +
Sbjct: 387 RHSPFFPGYRPQFYMRTTDVTGNVTKIMNDKDEEA--------KMCMPGDRVKMVVELIQ 438
Query: 355 PLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
P+ E RFA+R+ +TV GVI +
Sbjct: 439 PVACEQGM------RFAIREGGKTVGAGVINTI 465
>03_06_0699 -
35612919-35612989,35613079-35613319,35613506-35613568,
35613644-35613709,35614110-35614193,35614685-35614890,
35614977-35615067,35615176-35615280,35615552-35615626,
35615728-35615820,35615914-35615989,35616115-35616305
Length = 453
Score = 34.3 bits (75), Expect = 0.097
Identities = 38/150 (25%), Positives = 62/150 (41%)
Frame = -3
Query: 706 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 527
VEM + L GDNVG ++ + +++RG V K K F A++ VL
Sbjct: 318 VEMFKKILDHGEAGDNVGLLLRGLKRGDVQRGQVV--CKPGTVKTYQKFEAEIYVLTK-- 373
Query: 526 QISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLC 347
+T L ++ + A++ KV G + ++ +G L+ PL
Sbjct: 374 DEGGRHTAFLSNYSPQFYFRTADVTGKVVLPDGVEMVMPGDNVTAG----FELISPVPL- 428
Query: 346 VESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
P RFA+R+ +TV GV+ V
Sbjct: 429 -------EPGQRFALREGGRTVGAGVVSKV 451
>11_06_0516 + 24502645-24504507
Length = 620
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = -3
Query: 706 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 527
VE HEAL AV D V S++E+ R GD + PP + V++ G
Sbjct: 114 VEQVHEALL-AVDAD---IEVIKASIREVYRFPCDGDERRGPPPPSTAPATGVVMTRRMG 169
Query: 526 QISNG 512
+I G
Sbjct: 170 EIRRG 174
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 47 NYKIMLHYKPCKKYRKGMSL*P-FFPSK 127
N M PCKK +KGM++ P FF SK
Sbjct: 657 NVNKMSKLNPCKKQKKGMNILPKFFTSK 684
>03_05_0824 +
27980191-27980243,27980633-27980671,27980974-27982023,
27983097-27983262,27983439-27983549,27983637-27983688,
27984691-27984859,27985604-27985883
Length = 639
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 541 LNHPGQISNGYTPVLDCHTAHIACKFAEIKE-KVDRRTGKSTEVNPKSI 398
L+ P +ISNG TPV D ++ C+ K D + + +EV+ S+
Sbjct: 271 LHRPRRISNGTTPVFDDNSGSHLCQDVSSKSFSADDQCLQDSEVDKDSV 319
>07_03_0634 + 20125242-20125688
Length = 148
Score = 28.3 bits (60), Expect = 6.4
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Frame = +3
Query: 156 CMKNCAVNS-SSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNS 332
C + A S S++ + A ++A T PP ++LT + L R P G
Sbjct: 35 CANSVAYLSLSAFVMSGRAVASAAATASPPVGVQLTVTSEHSEWSILSPRKTCHPTGKVK 94
Query: 333 WKDSTHRGLE---GTKLTMAASPDLMDFGLTSVDLP 431
WK +E GT P+ G +V LP
Sbjct: 95 WKGRREHFVERLVGTAHLPRRRPERQPQGSGAVPLP 130
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.3 bits (60), Expect = 6.4
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = +3
Query: 216 AALVTLPPPASLKLT-ALMTPTATVCLMSRTAKRPRGGNSWKDSTHRGLEGTKLTMAASP 392
A + L PA + A+ P TV + T ++ RG K +GL G KLT S
Sbjct: 266 ALIYPLVSPAVVSCDIAIAYPMPTVNPVESTPRKGRGRPRKKPVEIKGLSGIKLTEDLST 325
Query: 393 DLMDFGLTSVDLPVRR 440
L LT ++ +R
Sbjct: 326 ALSPIALTCMEPKKKR 341
>01_06_0191 - 27334412-27335155
Length = 247
Score = 27.9 bits (59), Expect = 8.5
Identities = 24/82 (29%), Positives = 37/82 (45%)
Frame = +3
Query: 177 NSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDSTHRG 356
N+ S PL +S V LP +L + P A + TAK +GG++ S G
Sbjct: 164 NALSAVKPLAVYSVDKVLLP----FELFGVKAPAAAPT--ASTAKPKKGGSTEAASGPAG 217
Query: 357 LEGTKLTMAASPDLMDFGLTSV 422
E + T AAS + +G+ +
Sbjct: 218 AEDAEPTGAASARAVGWGVAGL 239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,672,348
Number of Sequences: 37544
Number of extensions: 412065
Number of successful extensions: 1179
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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