Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13d20
(714 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 256 1e-68
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 256 1e-68
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 256 1e-68
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 83 2e-16
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 46 4e-05
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 46 4e-05
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 32 0.47
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 32 0.47
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 32 0.47
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 29 3.3
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 5.8
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 5.8
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 5.8
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 28 7.6
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 7.6
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 256 bits (627), Expect = 1e-68
Identities = 119/152 (78%), Positives = 132/152 (86%)
Frame = -3
Query: 712 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 533
KSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++NH
Sbjct: 256 KSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNH 315
Query: 532 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 353
PGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KP
Sbjct: 316 PGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKP 375
Query: 352 LCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
LCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 376 LCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 256 bits (627), Expect = 1e-68
Identities = 119/152 (78%), Positives = 132/152 (86%)
Frame = -3
Query: 712 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 533
KSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++NH
Sbjct: 290 KSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNH 349
Query: 532 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 353
PGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KP
Sbjct: 350 PGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKP 409
Query: 352 LCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
LCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 410 LCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 256 bits (627), Expect = 1e-68
Identities = 119/152 (78%), Positives = 132/152 (86%)
Frame = -3
Query: 712 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 533
KSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P K A F AQVI++NH
Sbjct: 290 KSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQVIIMNH 349
Query: 532 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKP 353
PGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +KSGDA IV L+P+KP
Sbjct: 350 PGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKP 409
Query: 352 LCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
LCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 410 LCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 83.0 bits (196), Expect = 2e-16
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 1/143 (0%)
Frame = -3
Query: 682 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTP 503
+ V GDN+ F +K + EL+ G++ S ++ K F A+V+VL H I++GY+
Sbjct: 392 ERVVAGDNIKFKLKGIEENELQGGFIIC-SPDSLAKTGRVFDAEVLVLEHRSIIASGYSC 450
Query: 502 VLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 323
VL +A + +D++TG+ K +K + I+ L +P +E F+E+P
Sbjct: 451 VLHIQSAVEEVTVKGVIATIDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYP 508
Query: 322 PLGRFAVRDMRQTVAVG-VIKAV 257
LGRF +RD +T+A+G V+K V
Sbjct: 509 YLGRFTLRDEGKTIAIGKVLKVV 531
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/102 (22%), Positives = 45/102 (44%)
Frame = -3
Query: 562 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 383
F +++ I G L H+ + C F + +++ G+ + P+ I G +
Sbjct: 487 FEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGAS 546
Query: 382 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
A+V + + +E+F LGR R T+A G+++ V
Sbjct: 547 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/102 (22%), Positives = 45/102 (44%)
Frame = -3
Query: 562 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 383
F +++ I G L H+ + C F + +++ G+ + P+ I G +
Sbjct: 505 FEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGAS 564
Query: 382 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
A+V + + +E+F LGR R T+A G+++ V
Sbjct: 565 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 606
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 31.9 bits (69), Expect = 0.47
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 1/151 (0%)
Frame = -3
Query: 706 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 527
+E + + +A PGD +G ++ + K++RRG V + + K AQ+ VL
Sbjct: 303 LESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE-- 359
Query: 526 QISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVNLVPSKPL 350
TP+ + + H+ + +G S + K + G++A V L + +
Sbjct: 360 SEGGAKTPIANYFSEHVF--------SLTWDSGASVRIIGKDFVMPGESAEVELSLNSQM 411
Query: 349 CVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
+E P RF +R +T+ GV V
Sbjct: 412 FIE------PQQRFTIRKGAKTIGTGVFTDV 436
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 31.9 bits (69), Expect = 0.47
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 1/151 (0%)
Frame = -3
Query: 706 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 527
+E + + +A PGD +G ++ + K++RRG V + + K AQ+ VL
Sbjct: 304 LESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE-- 360
Query: 526 QISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVNLVPSKPL 350
TP+ + + H+ + +G S + K + G++A V L + +
Sbjct: 361 SEGGAKTPIANYFSEHVF--------SLTWDSGASVRIIGKDFVMPGESAEVELSLNSQM 412
Query: 349 CVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
+E P RF +R +T+ GV V
Sbjct: 413 FIE------PQQRFTIRKGAKTIGTGVFTDV 437
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 31.9 bits (69), Expect = 0.47
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 1/151 (0%)
Frame = -3
Query: 706 VEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 527
+E + + +A PGD +G ++ + K++RRG V + + K AQ+ VL
Sbjct: 304 LESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQLYVLKE-- 360
Query: 526 QISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVNLVPSKPL 350
TP+ + + H+ + +G S + K + G++A V L + +
Sbjct: 361 SEGGAKTPIANYFSEHVF--------SLTWDSGASVRIIGKDFVMPGESAEVELSLNSQM 412
Query: 349 CVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 257
+E P RF +R +T+ GV V
Sbjct: 413 FIE------PQQRFTIRKGAKTIGTGVFTDV 437
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 141 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 296
M Y +C ++N Y L ++A+V LPPP ++ + ++ A C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +3
Query: 195 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 347
+P+V + L PPP L +LM P TV + R K P G NS K T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 499 LDCHTAHIACKFAEIKEKVDRRTGKSTE 416
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 499 LDCHTAHIACKFAEIKEKVDRRTGKSTE 416
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 499 LDCHTAHIACKFAEIKEKVDRRTGKSTE 416
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = -3
Query: 709 SVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 533
S+ +A+ PG+ ++ LRRG V + + PP +FTA +++L H
Sbjct: 452 SIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLCH 509
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 549 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 680
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,781,047
Number of Sequences: 27780
Number of extensions: 355614
Number of successful extensions: 999
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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