Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13d18
(243 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 29 0.086
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|... 26 0.80
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 1.1
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 24 2.4
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 23 4.3
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 23 5.6
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8... 23 5.6
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 23 7.5
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 23 7.5
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 23 7.5
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 22 9.9
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 22 9.9
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 22 9.9
SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch... 22 9.9
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 22 9.9
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr... 22 9.9
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 29.1 bits (62), Expect = 0.086
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -2
Query: 203 DNYSLHNFYNNNRKPLKPTTLHDGNIK-KSVYENI 102
DNYSL F N N P KP+ H +K ++++E++
Sbjct: 112 DNYSLVIFSNQNGIPRKPSAGHTFQMKIRAIFESL 146
>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 0.80
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -2
Query: 224 YCLCCTMDNYSLHNFYNNNRKPLKPTTLHDGNIKKSVYENITYVRKLMCKENMP 63
+CL CT+ L FY K +K T + K+ + I + K ENMP
Sbjct: 116 WCLVCTLALIFLTYFYETWTKAVKVTVIFLAQCVKACGKGIKHFLKKW--ENMP 167
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.4 bits (53), Expect = 1.1
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -2
Query: 188 HNFYNNNRKPLKPTTLHDGNIKKSVYENITYVRKLMCKENMPGEHDHKFYNR 33
HN Y++ KP+ L KS Y +++ R L K++ G D KF+ +
Sbjct: 326 HNIYSSFIKPIDDRRLEFDEQSKSFYGSLS--RYLSAKKDKKG-GDSKFFQK 374
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 24.2 bits (50), Expect = 2.4
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -2
Query: 182 FYNNNRK--PLKPTTLHDGNIKKSVYENITYVRKLM 81
F N K PL+P+ HD K S Y R++M
Sbjct: 514 FVNKRSKVLPLRPSVTHDNLSKSSDYSKNEVEREIM 549
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 23.4 bits (48), Expect = 4.3
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -2
Query: 200 NYSLHNFYNNNRKPLKP 150
NY+ N YN N K KP
Sbjct: 233 NYTRSNAYNKNNKDQKP 249
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 23.0 bits (47), Expect = 5.6
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = +2
Query: 170 CCCKNCATNNYP*CSTGNITDA 235
CCC C + P GNI A
Sbjct: 1103 CCCSKCNSTMSPFWWPGNICQA 1124
>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
Cut8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 23.0 bits (47), Expect = 5.6
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = -2
Query: 161 PLKPTTLHDGNIKKSVYENITYVRKLMCKENMPGEHDHKFYNRGYNKENKY 9
PL+ H+ + + E + Y+++L E + E H F N +N +
Sbjct: 190 PLEELEEHNKTSQNRMEEALNYLKQLQKNEPLVHERSHTFQQT--NPQNNF 238
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 22.6 bits (46), Expect = 7.5
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 158 EVCGCCCKNCATNNY 202
++ G CC+NC NY
Sbjct: 155 QIEGWCCQNCDILNY 169
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 22.6 bits (46), Expect = 7.5
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = -2
Query: 224 YCLCCTMDNYSLHNFYNNNRKPLKPTTLHDGNIKKSVYENITYVRKLM 81
+CL CT+ L FY K +K T + K + + +R+ M
Sbjct: 116 WCLVCTLALIFLTYFYETWVKAVKVTVISLAKCVKVISIGLFNIRREM 163
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 22.6 bits (46), Expect = 7.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 224 YCLCCTMDNYSLHNFYNNNRKPLKPTTLHDGNIKK 120
+CL CT+ L FY K +K T + N +K
Sbjct: 116 WCLVCTLALIFLTYFYETWTKAVKVTAVGLYNSRK 150
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 22.2 bits (45), Expect = 9.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 143 LHDGNIKKSVYENITYV 93
L DGN+K EN T+V
Sbjct: 51 LLDGNLKSKELENATFV 67
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 22.2 bits (45), Expect = 9.9
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -2
Query: 167 RKP--LKPTTLHDGNIKKSVYENITYVRKLMCKENMPGEHD 51
RKP L +TLH N K+ + M K N+PG +
Sbjct: 133 RKPSSLSSSTLHSVNEKQPNSSISPTIESSMNKVNLPGAEE 173
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 22.2 bits (45), Expect = 9.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 71 NMPGEHDHKFYNRGYNKENK 12
N+ G+ DHK N + ENK
Sbjct: 11 NLNGDSDHKSDNSSSSLENK 30
>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 22.2 bits (45), Expect = 9.9
Identities = 11/35 (31%), Positives = 14/35 (40%)
Frame = +2
Query: 107 FRKPIF*CYHRVTLSA*EVCGCCCKNCATNNYP*C 211
F+ P Y R + GC CKNC + C
Sbjct: 405 FKLPTSCSYCREIIWGLSKRGCVCKNCGFKCHARC 439
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 22.2 bits (45), Expect = 9.9
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 176 CKNCATNNYP 205
C+NCAT N P
Sbjct: 172 CQNCATTNTP 181
>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
3|||Manual
Length = 269
Score = 22.2 bits (45), Expect = 9.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 224 YCLCCTMDNYSLHNFYNNNRKPLKPTTL 141
+CL CT+ L FY K +K T +
Sbjct: 116 WCLVCTLALIFLTYFYETWTKAVKVTVI 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 946,124
Number of Sequences: 5004
Number of extensions: 16751
Number of successful extensions: 67
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 43412082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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