Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13d15
(169 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 28 0.14
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 25 1.8
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual 24 2.3
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 24 3.1
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 24 3.1
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 23 4.1
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 23 4.1
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 4.1
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 23 4.1
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 23 5.4
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 23 5.4
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 23 5.4
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 22 9.4
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ... 22 9.4
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 22 9.4
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 22 9.4
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 28.3 bits (60), Expect = 0.14
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 126 EYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 31
EY+P SI G+K K + K+ IKN + T
Sbjct: 472 EYLPDSIKGTKFYKLPIELKEDEEIKNLKTDT 503
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 135 STTEYVPTSISGSKKRK 85
S++ +VP +S SKKRK
Sbjct: 71 SSSHFVPNGVSNSKKRK 87
>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 24.2 bits (50), Expect = 2.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 144 VAPSTTEYVPTSISGSKKRKNSVPAKQRSS 55
+ P TT PTSIS S N++ SS
Sbjct: 68 ITPGTTTIYPTSISTSGVSSNNIDETSVSS 97
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 23.8 bits (49), Expect = 3.1
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 141 APSTTEYVPTSISGSKKRKNSVPAKQ-RSSIKNRRNTTA 28
AP + VPT +G +SVP + S++K + +A
Sbjct: 490 APQPSSNVPTKFTGGASESSSVPPRPIPSAMKGKAPASA 528
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 23.8 bits (49), Expect = 3.1
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = -2
Query: 138 PSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRR-----NTTAAPTL 16
P EY T S + KNS A + +K+R N+ AA TL
Sbjct: 169 PKRAEYTLTDPSKTSDTKNSTEADEDIEMKSREVSPASNSVAATTL 214
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 23.4 bits (48), Expect = 4.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 138 PSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTL 16
P+T+ SIS +K S + +K+ +T AAP L
Sbjct: 85 PTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAAPQL 125
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 23.4 bits (48), Expect = 4.1
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = -2
Query: 165 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTL 16
++A + P+ P T + P+ + S +KN +R S + ++N ++ TL
Sbjct: 570 SLARRKPL-PDTESHSPSPSATSSIKKNPSSIFRRFSSRRKQNKSSTSTL 618
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 23.4 bits (48), Expect = 4.1
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 146 PLHRLLQNTCPLRLAAARKEKTQFRPNNDL 57
PLH L++ C L AA K FR N L
Sbjct: 213 PLHEQLESRCALHTAA----KDPFRSKNSL 238
>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 23.4 bits (48), Expect = 4.1
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 123 YVPTS--ISGSKKRKNSVPAKQRSSIKNRRNTTAAPT 19
Y PT + +K N+V +K+ S + +NT A PT
Sbjct: 60 YRPTKKELKKAKMNGNAVNSKELSPNTDNQNTPAGPT 96
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 23.0 bits (47), Expect = 5.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 159 ALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRS 58
ALK P T+ S + S K K +VP +Q+S
Sbjct: 530 ALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKS 563
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -2
Query: 126 EYVPTSISGSKKRKNSVPAKQRSSIKNRRN 37
E V + S +KR + P+K++ ++ R+N
Sbjct: 66 EVVGSDNSSPEKRSENSPSKRKDILEQRKN 95
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 111 SISGSKKRKNSVPAKQRSSIKNR 43
S+S SK SVP R KNR
Sbjct: 636 SLSSSKDANRSVPESPRREKKNR 658
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = +1
Query: 115 GHVFCSRRCNGQLERY 162
GH FCS R G+ + +
Sbjct: 12 GHEFCSYRIKGEAQNF 27
>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 305
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 141 APSTTEYVPTSISGSKKRKNSVPAKQRS 58
+P ++ + PT K+RKN+VP K S
Sbjct: 176 SPQSSYHTPT-----KRRKNAVPRKSSS 198
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = -2
Query: 153 KLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTT 31
K PV+ ST + S K ++ KQ+ + K + T
Sbjct: 234 KTPVSNSTASQASENASDKKTKEKKSSGKQKIASKKKDQLT 274
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -2
Query: 111 SISGSKKRKNSVPAKQRSSIKNRRNTT 31
SIS S++ K P+K + +++++R +T
Sbjct: 572 SISLSEETKQEKPSKLKETVESKRLST 598
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 673,229
Number of Sequences: 5004
Number of extensions: 9721
Number of successful extensions: 39
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 36
effective length of database: 2,182,334
effective search space used: 41464346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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