Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13d15
(169 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014298-1416|AAF46559.1| 1161|Drosophila melanogaster CG15311-P... 31 0.22
AE014296-3423|AAF51643.2| 1959|Drosophila melanogaster CG11451-P... 30 0.38
AY069226-1|AAL39371.1| 571|Drosophila melanogaster GH27293p pro... 28 1.5
AE014134-2139|AAF53150.1| 571|Drosophila melanogaster CG6785-PA... 28 1.5
BT001323-1|AAN71078.1| 495|Drosophila melanogaster AT16616p pro... 27 4.6
AE014134-2469|AAS64704.1| 1853|Drosophila melanogaster CG32972-P... 27 4.6
BT001450-1|AAN71205.1| 719|Drosophila melanogaster GH27257p pro... 26 8.1
AF145594-1|AAD38569.1| 721|Drosophila melanogaster BcDNA.GH0191... 26 8.1
AE014296-3425|AAF51645.2| 926|Drosophila melanogaster CG3680-PA... 26 8.1
AE014296-654|AAN11564.1| 710|Drosophila melanogaster CG12076-PB... 26 8.1
AE014296-653|AAF47768.2| 721|Drosophila melanogaster CG12076-PA... 26 8.1
>AE014298-1416|AAF46559.1| 1161|Drosophila melanogaster CG15311-PA
protein.
Length = 1161
Score = 31.1 bits (67), Expect = 0.22
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 162 VALKLPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPT 19
+A K PVA STT VPT+++ SK S + ++ T +P+
Sbjct: 340 LAKKYPVATSTTTKVPTTLATSKTTSRSSSSSTTTTTMATSTTATSPS 387
>AE014296-3423|AAF51643.2| 1959|Drosophila melanogaster CG11451-PA
protein.
Length = 1959
Score = 30.3 bits (65), Expect = 0.38
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 141 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLM 10
AP T Y PT S + ++S+ + R S KN+ T A +L M
Sbjct: 227 APVATLYPPTQQSLMELEEDSIVREMRESTKNQTKTPAQKSLFM 270
>AY069226-1|AAL39371.1| 571|Drosophila melanogaster GH27293p
protein.
Length = 571
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 117 PTSISGSKKRKNSVPAKQRSSIKNRRNTTAAP 22
P I G+KK +N PA + TTAAP
Sbjct: 333 PPRIEGNKKNQNKRPATTTTKATTTTTTTAAP 364
>AE014134-2139|AAF53150.1| 571|Drosophila melanogaster CG6785-PA
protein.
Length = 571
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 117 PTSISGSKKRKNSVPAKQRSSIKNRRNTTAAP 22
P I G+KK +N PA + TTAAP
Sbjct: 333 PPRIEGNKKNQNKRPATTTTKATTTTTTTAAP 364
>BT001323-1|AAN71078.1| 495|Drosophila melanogaster AT16616p
protein.
Length = 495
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -2
Query: 150 LPVAPSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPTLLMVSD 1
+P STT + S S + +N VPA + I + T + M++D
Sbjct: 405 VPTPTSTTSIYQPTTSSSYQGQNPVPANNNAPIGSNPRTDLTNIMRMLAD 454
>AE014134-2469|AAS64704.1| 1853|Drosophila melanogaster CG32972-PA,
isoform A protein.
Length = 1853
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 141 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTAAPT 19
AP+TT+ +PT+ + K SS + TT APT
Sbjct: 1583 APTTTDNIPTTTNAPTTTKEITTTTSASS-TDETTTTTAPT 1622
>BT001450-1|AAN71205.1| 719|Drosophila melanogaster GH27257p
protein.
Length = 719
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 135 STTEYVPTSISGSKKRKNSVPAKQ 64
S+ +S++GS KRK PAKQ
Sbjct: 61 SSVSTATSSLAGSSKRKTKKPAKQ 84
>AF145594-1|AAD38569.1| 721|Drosophila melanogaster BcDNA.GH01918
protein.
Length = 721
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 135 STTEYVPTSISGSKKRKNSVPAKQ 64
S+ +S++GS KRK PAKQ
Sbjct: 63 SSVSTATSSLAGSSKRKTKKPAKQ 86
>AE014296-3425|AAF51645.2| 926|Drosophila melanogaster CG3680-PA
protein.
Length = 926
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 141 APSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTTA 28
AP+T + SIS + K V K+RS+ R+T A
Sbjct: 412 APTTPKTTVKSISPTTTTKKEVAPKKRSATPTARSTKA 449
>AE014296-654|AAN11564.1| 710|Drosophila melanogaster CG12076-PB,
isoform B protein.
Length = 710
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 135 STTEYVPTSISGSKKRKNSVPAKQ 64
S+ +S++GS KRK PAKQ
Sbjct: 52 SSVSTATSSLAGSSKRKTKKPAKQ 75
>AE014296-653|AAF47768.2| 721|Drosophila melanogaster CG12076-PA,
isoform A protein.
Length = 721
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 135 STTEYVPTSISGSKKRKNSVPAKQ 64
S+ +S++GS KRK PAKQ
Sbjct: 63 SSVSTATSSLAGSSKRKTKKPAKQ 86
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,502,586
Number of Sequences: 53049
Number of extensions: 110746
Number of successful extensions: 615
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 24,988,368
effective HSP length: 36
effective length of database: 23,078,604
effective search space used: 438493476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -