Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13d13
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0268 - 24050721-24050971,24051112-24051276,24051479-240517... 195 3e-50
08_02_1558 + 27870327-27870332,27870890-27871163,27871438-278715... 161 4e-40
08_01_0351 + 3095639-3095995,3096134-3096187,3096407-3096490,309... 35 0.047
04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253 35 0.063
04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388 34 0.083
12_02_1086 - 25946501-25946632,25947140-25947385,25947510-25948193 34 0.11
06_01_0375 + 2699179-2699264,2699697-2699786,2699913-2699991,270... 30 1.3
03_02_0990 - 13028011-13028114,13028182-13028554,13029488-130296... 30 1.8
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497... 29 3.1
09_06_0083 + 20753191-20754480 28 5.4
09_04_0540 - 18420517-18420822,18420903-18421037,18421118-184212... 28 5.4
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183... 28 5.4
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 28 5.4
07_01_0026 + 190568-190829,192475-194534,194620-195168 28 5.4
04_04_0217 - 23693124-23693535,23693965-23694052,23694428-236945... 28 5.4
02_02_0666 - 12757555-12757688,12757968-12758029,12758156-127582... 28 5.4
10_08_0799 - 20650799-20650947,20651022-20651114,20651906-206519... 28 7.2
08_02_0825 - 21570628-21570715,21571436-21571812,21572364-215727... 28 7.2
07_01_0430 - 3277844-3277851,3277893-3278096,3278214-3278303,327... 28 7.2
08_02_1135 - 24590664-24591231,24591314-24591393,24591523-24591579 27 9.5
07_03_0548 + 19349943-19350290,19350372-19351100 27 9.5
07_01_0344 - 2490700-2493249 27 9.5
06_03_1468 - 30354724-30354945,30359326-30359497,30359587-303597... 27 9.5
06_02_0100 + 11735424-11735958,11736168-11736916,11752859-117531... 27 9.5
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 27 9.5
>04_04_0268 -
24050721-24050971,24051112-24051276,24051479-24051749,
24052344-24052517
Length = 286
Score = 195 bits (475), Expect = 3e-50
Identities = 100/168 (59%), Positives = 118/168 (70%), Gaps = 1/168 (0%)
Frame = -1
Query: 640 SATISAPHMHAHALEKLKNQLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISEL 461
+ATISAPHMHA LE LK+ L PG ALDVGSGSGYLTAC AMM+G GR VGIEHI EL
Sbjct: 117 NATISAPHMHATCLELLKDHLQPGMHALDVGSGSGYLTACFAMMVGPEGRAVGIEHIPEL 176
Query: 460 VNLATKNIQNDNPS-LLSSERIKLVVGDGRLGYPSEAPYSAIHVGAAAPTLPQALIDQLK 284
V +T+N+Q + LL + V DGRLG+P +APY AIHVGAAAP +PQ L+DQLK
Sbjct: 177 VAASTENVQRSAAAQLLKDGSLSFHVADGRLGWPDDAPYDAIHVGAAAPEIPQPLVDQLK 236
Query: 283 PGGRLIVPVGPEGGEQHLTQVDKAQDGTTTVKKLMSVIYVPLTDKEHQ 140
GGR+++PVG Q L VDK DG+ TV+ SV YVPLT + Q
Sbjct: 237 TGGRMVIPVG--SYFQELQVVDKNADGSVTVQNDASVRYVPLTSRSAQ 282
>08_02_1558 +
27870327-27870332,27870890-27871163,27871438-27871515,
27871753-27871917,27872353-27872603
Length = 257
Score = 161 bits (391), Expect = 4e-40
Identities = 93/194 (47%), Positives = 119/194 (61%), Gaps = 27/194 (13%)
Frame = -1
Query: 640 SATISAPHMHAHALEKLKNQLVPGEKALDVGSG--------------------------S 539
+ATISAPHMHA LE L+ L PG +ALDVGSG +
Sbjct: 62 NATISAPHMHASCLELLEKHLQPGMRALDVGSGFEMQKCLPTYVEKTIFSFISQLFREGT 121
Query: 538 GYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPS-LLSSERIKLVVGDGRLGYP 362
GYLTAC A+M+G GR VG+EHI ELV + +NI+ + L+ + + + DGR G+P
Sbjct: 122 GYLTACFAIMVGPEGRAVGVEHIPELVTSSIENIKKSAAAPQLTDGSLSIHITDGREGWP 181
Query: 361 SEAPYSAIHVGAAAPTLPQALIDQLKPGGRLIVPVGPEGGEQHLTQVDKAQDGTTTVKKL 182
APY AIHVGAAAP +PQALI+QLKPGGR+++PVG Q L VDK QDG +++
Sbjct: 182 ELAPYDAIHVGAAAPQIPQALIEQLKPGGRMVIPVGTM--FQELKVVDKNQDGKVSIRDE 239
Query: 181 MSVIYVPLTDKEHQ 140
+V YVPLT K+ Q
Sbjct: 240 TAVRYVPLTSKDAQ 253
>08_01_0351 +
3095639-3095995,3096134-3096187,3096407-3096490,
3096972-3097097,3097174-3097241,3097324-3097393,
3097597-3097662,3098404-3098454
Length = 291
Score = 35.1 bits (77), Expect = 0.047
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Frame = -1
Query: 583 QLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQN-------DN 425
Q++ ++ ++VG +GY + +A+ L E+GR+V E + +A K Q D
Sbjct: 151 QILGAQRCIEVGVYTGYSSLAVALALPESGRLVACERDERCLEVAKKYYQRSGVAHKVDV 210
Query: 424 PSLLSSERIKLVVGDGRL 371
L+++ +KL++ G +
Sbjct: 211 KHALAADSLKLLIDGGEV 228
>04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253
Length = 326
Score = 34.7 bits (76), Expect = 0.063
Identities = 24/87 (27%), Positives = 43/87 (49%)
Frame = -1
Query: 583 QLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPSLLSSE 404
+LVPG L+ G+GSG LT +A + GRV + + A ++ + ++ + + +
Sbjct: 120 ELVPGCLVLESGTGSGSLTTSLARAVAPHGRVCTFDFHDQRAASAREDFERNDLTSIITV 179
Query: 403 RIKLVVGDGRLGYPSEAPYSAIHVGAA 323
++ + G G+P E H GAA
Sbjct: 180 AVRDIQGQ---GFPEE------HTGAA 197
>04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388
Length = 327
Score = 34.3 bits (75), Expect = 0.083
Identities = 24/87 (27%), Positives = 42/87 (48%)
Frame = -1
Query: 583 QLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPSLLSSE 404
+LVPG L+ G+GSG LT +A + GRV + + A ++ + + + + +
Sbjct: 120 ELVPGCLVLESGTGSGSLTTSLARAVAPHGRVCTFDFHDQRAASAREDFERNGLTSIITV 179
Query: 403 RIKLVVGDGRLGYPSEAPYSAIHVGAA 323
++ + G G+P E H GAA
Sbjct: 180 AVRDIQGQ---GFPEE------HTGAA 197
>12_02_1086 - 25946501-25946632,25947140-25947385,25947510-25948193
Length = 353
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -1
Query: 556 DVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQ 434
D+G+GSG + +A MLG GRV + +++A N+Q
Sbjct: 183 DLGTGSGAIAVAVARMLGPEGRVFATDVSEVAIDVARLNVQ 223
>06_01_0375 +
2699179-2699264,2699697-2699786,2699913-2699991,
2700816-2700893,2701290-2701338,2702183-2702232,
2702704-2702853,2703437-2703517,2703593-2703609,
2705804-2705893,2706033-2706111,2706234-2706311,
2707554-2707687,2707858-2707936,2708108-2708188,
2708263-2708400
Length = 452
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = -1
Query: 571 GEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPSLLSSE 404
G K +DVG G G L+ +A M G T V GI+ + + + +A + +D PS S E
Sbjct: 70 GLKVIDVGCGGGILSEPLARM-GAT--VTGIDAVDKNIKIARVHAASD-PSTASIE 121
>03_02_0990 -
13028011-13028114,13028182-13028554,13029488-13029631,
13030389-13030396,13030634-13030711,13030968-13031132,
13031414-13031471
Length = 309
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 421 LGCHFGCFWLPNSQVLIYVLFQLPCQFLLTSWP 519
+G H G +WL ++ +++ LP + L + WP
Sbjct: 221 VGSHDGAWWLASNMLILLWFVGLPIRVLASDWP 253
>09_04_0695 -
19547101-19548010,19548089-19548587,19549461-19549728,
19551025-19551687,19551849-19552060,19552203-19552593,
19552659-19553107,19553454-19553790
Length = 1242
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -1
Query: 346 SAIHVGAAAPTLPQALIDQLKPGGRLIVPVGPEG 245
+++ +G+AAP P A I + PG + P+GP+G
Sbjct: 500 ASVPIGSAAPLGPVAPIGPVSPGP--VAPLGPDG 531
>09_06_0083 + 20753191-20754480
Length = 429
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -1
Query: 352 PYSAIHVGAAAPTLPQALIDQLKPGGRLIVPVGPEGG 242
P + V A +P LP PGG + P P GG
Sbjct: 294 PLPPVDVPALSPPLPHGKTPSGAPGGIALPPAAPAGG 330
>09_04_0540 -
18420517-18420822,18420903-18421037,18421118-18421262,
18421384-18421463,18421573-18421683
Length = 258
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -1
Query: 583 QLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIE 476
+L+ + A++VG +GY A+ L + G++V I+
Sbjct: 82 ELISAKNAIEVGVFTGYSLLATALALPDDGKIVAID 117
>08_02_0113 - 12715888-12716181,12717443-12717602,12718327-12718368,
12718443-12718465,12718616-12720653,12720736-12720965,
12722207-12722329,12722438-12723010,12724684-12724733,
12726828-12726923,12726987-12727394,12727609-12727795
Length = 1407
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 165 T*ITLINFFTVVVPSCALST*VKCCSPPSGPTGTISLPPGFN 290
T +T+ + F V+PS S V +P S P + PPGFN
Sbjct: 1074 TEVTIPSAFYSVLPSVVSSDGVSKKNPVSRPGRHVGPPPGFN 1115
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = -1
Query: 580 LVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATK 443
L+ G LDVG G+G L+ A RV+ ++ +++V++AT+
Sbjct: 289 LMNGATVLDVGCGTGILSLFAAK--AGASRVIAVDGSAKMVSVATE 332
>07_01_0026 + 190568-190829,192475-194534,194620-195168
Length = 956
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 188 LYSCCSILCFINLSQMLFTTLRPYRNY 268
L+ C + CFI L F TLR Y Y
Sbjct: 832 LFLICGVACFIALLIFFFRTLRQYFRY 858
>04_04_0217 -
23693124-23693535,23693965-23694052,23694428-23694503,
23694729-23694787,23694853-23694934,23695533-23696577,
23696700-23696998
Length = 686
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -1
Query: 331 GAAAPTLPQALIDQLKPGG-RLIVPVGPEGGEQ 236
GAA+P LP D L+PGG R + G G+Q
Sbjct: 314 GAASPRLPGCRRDALRPGGWRGVARWGAAAGQQ 346
>02_02_0666 -
12757555-12757688,12757968-12758029,12758156-12758223,
12758359-12758490,12759116-12759351,12759451-12759648,
12760123-12760213,12760566-12760710,12760837-12760955
Length = 394
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/66 (31%), Positives = 29/66 (43%)
Frame = -1
Query: 574 PGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQNDNPSLLSSERIK 395
PGE LD+ + G +A MLG G + G++ LA SL +R +
Sbjct: 107 PGEHVLDLCAAPGAKLCMLADMLGGRGSLTGVDVAKH--RLAACRTMLQKYSL--GDRCR 162
Query: 394 LVVGDG 377
L V DG
Sbjct: 163 LFVADG 168
>10_08_0799 -
20650799-20650947,20651022-20651114,20651906-20651934,
20652039-20652097,20652170-20652283,20652374-20652534,
20652544-20652663,20652741-20653469,20654980-20655244
Length = 572
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +1
Query: 178 SSISLQLLFHPVLYQPESNVVHHPQALQELLASLPVSIDQLE 303
SS+S Q+L +PV+ Q N++ PQ++ +LL P + + +E
Sbjct: 398 SSLS-QILQNPVMMQMMQNIMSDPQSMNQLLNFNPNTRNLME 438
>08_02_0825 -
21570628-21570715,21571436-21571812,21572364-21572755,
21573943-21574311,21574395-21574580,21574709-21574845,
21575030-21575089,21575206-21575277,21575399-21575542,
21575702-21575773,21575928-21576060,21576157-21576247
Length = 706
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 583 QLVPGEKALDVGSGSGYLTACMAMML 506
+LV G++AL+VG GSG + +ML
Sbjct: 525 ELVTGQRALEVGKGSGVIQHQKGVML 550
>07_01_0430 -
3277844-3277851,3277893-3278096,3278214-3278303,
3279048-3279179,3279220-3279403
Length = 205
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -1
Query: 361 SEAPYSAIHVGA-AAPTLPQALIDQLKPGGRLIVPVGPEGGEQHLTQVDKAQ 209
S +P S+ V A A+P +P + + +PG RL V GGEQ +T + +Q
Sbjct: 13 SPSPSSSGKVSAMASPPVPSSAAPRRRPGTRLSVAT---GGEQLVTAQEASQ 61
>08_02_1135 - 24590664-24591231,24591314-24591393,24591523-24591579
Length = 234
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -1
Query: 583 QLVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNIQN 431
+++ A++VG +GY A+ L + G+VV I+ E L I++
Sbjct: 64 KMIGARNAVEVGVFTGYSLLATALALPDDGKVVAIDVSREYYELGRPVIED 114
>07_03_0548 + 19349943-19350290,19350372-19351100
Length = 358
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -1
Query: 580 LVPGEKALDVGSGSGYLTACMAMMLGETGRVVGIEHISELVNLATKNI 437
L PG+ L+VG G+G LT + ++ RV +E +V+ T +
Sbjct: 61 LRPGDAVLEVGPGTGNLT--VRLLESPAARVSAVEIDPRMVDAVTARV 106
>07_01_0344 - 2490700-2493249
Length = 849
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +1
Query: 310 VKWELQPRHELHCKGLQMDNRDDHHQLQV*SSQMRVSLGC 429
V W L+ +LH LQ N DD Q ++ S +LGC
Sbjct: 783 VLWHLESALQLHQGLLQSANTDDLSQPELKLSDASCNLGC 822
>06_03_1468 -
30354724-30354945,30359326-30359497,30359587-30359770,
30359865-30360111,30360817-30362052
Length = 686
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -1
Query: 376 RLGYPSEAPYSAIHVGAAAPTLPQALIDQLKP 281
RL +P P + + + AAAPTLP AL D P
Sbjct: 28 RLPHPKPLPAALLALAAAAPTLP-ALADVPAP 58
>06_02_0100 +
11735424-11735958,11736168-11736916,11752859-11753118,
11760085-11760124
Length = 527
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = -3
Query: 614 ACACIRKVKKPVGTRRKSLRC-WFGIWLPHCLYGHDVRRNWQGSWNRTYIRTCEFGNQKH 438
ACA + V P G ++ C F +W P C V + WNR +++ + + +
Sbjct: 67 ACATTKDVSTPAGPKKTVFGCVSFMLW-PECSDAWPVPAS-MAKWNRNWMQKWFYVDNPY 124
Query: 437 P 435
P
Sbjct: 125 P 125
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 188 LYSCCSILCFINLSQMLFTTLRPYRNY*PP 277
L+ C I C I L FTT+R + + PP
Sbjct: 783 LFLICGIACVIALLIYFFTTVRKFLRHEPP 812
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,221,728
Number of Sequences: 37544
Number of extensions: 410270
Number of successful extensions: 1198
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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