Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13d11
(744 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203; Eukary... 324 2e-87
UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10; Culicim... 322 7e-87
UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 317 2e-85
UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, wh... 225 9e-58
UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1; ... 224 2e-57
UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5... 218 1e-55
UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila... 182 4e-47
UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2; T... 180 3e-44
UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba hi... 180 4e-44
UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9; Trypanos... 177 2e-43
UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lambli... 157 2e-37
UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, wh... 144 3e-33
UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillard... 134 2e-30
UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1; Encephal... 124 3e-27
UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S riboso... 108 2e-22
UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila melanogaster|... 62 1e-11
UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo sapiens... 65 2e-09
UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2; Methano... 62 1e-08
UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1; ... 62 1e-08
UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n... 61 3e-08
UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7; Euryarc... 60 6e-08
UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n... 59 1e-07
UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1; Thermoc... 58 2e-07
UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 56 9e-07
UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5; Sulfolo... 55 2e-06
UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 55 2e-06
UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6; Halobac... 54 3e-06
UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2; Desulfu... 52 2e-05
UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella... 51 3e-05
UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus ... 50 8e-05
UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyr... 48 2e-04
UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum... 45 0.002
UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8; Euryarc... 44 0.003
UniRef50_Q978W7 Cluster: 30S ribosomal protein S6e; n=5; Thermop... 44 0.004
UniRef50_A6C4P7 Cluster: Pseudouridine synthase; n=1; Planctomyc... 43 0.009
UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5; Thermop... 42 0.016
UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus ... 41 0.037
UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1; Nanoarc... 36 1.1
UniRef50_Q87BM0 Cluster: Putative uncharacterized protein; n=1; ... 35 1.8
UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcin... 34 3.2
UniRef50_A6L045 Cluster: Putative uncharacterized protein; n=1; ... 33 5.6
UniRef50_Q6N427 Cluster: Phytoene dehydrogenase-related protein;... 33 7.4
UniRef50_Q0IR54 Cluster: Os11g0676800 protein; n=1; Oryza sativa... 33 9.8
UniRef50_A2F5X7 Cluster: Putative uncharacterized protein; n=1; ... 33 9.8
>UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203;
Eukaryota|Rep: 40S ribosomal protein S6 - Homo sapiens
(Human)
Length = 249
Score = 324 bits (795), Expect = 2e-87
Identities = 164/224 (73%), Positives = 181/224 (80%)
Frame = -1
Query: 735 ATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVL 556
ATGCQKL EV DE KLR FYEKRM EV AD LG+EWKGYV+R++GGNDKQGFPMKQGVL
Sbjct: 9 ATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVL 68
Query: 555 TNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGN 376
T+ RVRLL+SKGHSCYRPRR GERKRKSVRGCIVDANLSVL LVIV+KG ++IPGLTD
Sbjct: 69 THGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTT 128
Query: 375 VPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVV 196
VPRRLGPKRAS+IRKLFNLSKEDDVR+YVV++ L KEGK KPR KAPKIQRLVTP V
Sbjct: 129 VPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPL-NKEGK---KPRTKAPKIQRLVTPRV 184
Query: 195 LQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 64
LQ K AEYAKLLA+R KE+K +RQE+I
Sbjct: 185 LQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQI 228
>UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10;
Culicimorpha|Rep: 40S ribosomal protein S6 - Aedes
albopictus (Forest day mosquito)
Length = 349
Score = 322 bits (790), Expect = 7e-87
Identities = 153/224 (68%), Positives = 180/224 (80%)
Frame = -1
Query: 735 ATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVL 556
ATG QK FEV+D+HKLR FY+KRMGAE+ AD LGDEWKGYV ++AGGNDKQGFPMKQGVL
Sbjct: 9 ATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQGFPMKQGVL 68
Query: 555 TNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGN 376
TN+RVRLL+ KGHSCYRPRR GERKRKSVRGCIVD NLS LAL++V+KG ++IPGLTD
Sbjct: 69 TNTRVRLLLKKGHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVVKKGEKDIPGLTDTT 128
Query: 375 VPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVV 196
V RRLGPKRAS IRKL+NL+KEDDVR+YVVKR LP K+GK KPR KAPKIQRL+TPVV
Sbjct: 129 VLRRLGPKRASNIRKLYNLTKEDDVRQYVVKRPLPEKDGK---KPRTKAPKIQRLITPVV 185
Query: 195 LQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 64
LQ K +EAEY K+L R+++ ++RR+ +
Sbjct: 186 LQRKRHRLAIKKRRVESRKEAEAEYMKILHLRRRQERIRRRSRL 229
>UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 245
Score = 317 bits (778), Expect = 2e-85
Identities = 151/223 (67%), Positives = 175/223 (78%)
Frame = -1
Query: 732 TGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLT 553
TGCQKL E+ DE K+R FY+KRM EV + LGDEWKGYV R+ GGNDKQGFPMKQG++T
Sbjct: 10 TGCQKLIEIEDERKVRSFYDKRMAMEVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMT 69
Query: 552 NSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNV 373
N RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD +
Sbjct: 70 NGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTI 129
Query: 372 PRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVL 193
PRRLGPKR KIRK+FNLSKEDDVR+YV++R LP KEGK K + KAPKIQRLVTPVVL
Sbjct: 130 PRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGK---KAKSKAPKIQRLVTPVVL 186
Query: 192 QXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 64
Q K A+YAKLLA+R KE+K +R E++
Sbjct: 187 QRKRKRLALKRQRAQKCKQEAADYAKLLAKRAKEAKEKRHEQL 229
>UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_28,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 315
Score = 225 bits (550), Expect = 9e-58
Identities = 109/179 (60%), Positives = 135/179 (75%), Gaps = 3/179 (1%)
Frame = -1
Query: 732 TGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLT 553
TG QK E+ D+ K IF++KRMG VEAD LG+E+KGYVL++ GGNDKQGFPM+QGVL
Sbjct: 10 TGAQKTVEIDDDKKCSIFFDKRMGQVVEADNLGEEYKGYVLKITGGNDKQGFPMRQGVLF 69
Query: 552 NSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNV 373
RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLAL +V+KGA EI GLTD NV
Sbjct: 70 KGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKKGANEIAGLTDQNV 129
Query: 372 PRRLGPKRASKIRKLFNLSKEDD---VRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVT 205
PRRLGPKR +K+R+LF K D V++ +++R K+GK+ R KAPKIQRLVT
Sbjct: 130 PRRLGPKRLTKLRRLFGFKKADGVAIVQKNLIRRTWTTKDGKK----RQKAPKIQRLVT 184
>UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 293
Score = 224 bits (548), Expect = 2e-57
Identities = 112/217 (51%), Positives = 145/217 (66%), Gaps = 3/217 (1%)
Frame = -1
Query: 732 TGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLT 553
TG QK E+ D+ K IF +K+MG EVE D LGDE+KGYV ++AGGNDK GFPMKQGV+
Sbjct: 10 TGAQKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDGFPMKQGVMV 69
Query: 552 NSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNV 373
RVRLL+S+GHSC+ RR G RKRKSVRGCIV ++ VLAL IV+KG EI GLT +
Sbjct: 70 RGRVRLLLSEGHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIVKKGVAEIDGLTTVTL 129
Query: 372 PRRLGPKRASKIRKLFNLSKEDD---VRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTP 202
PR+LGPKRA+ I+KLF L KEDD +++ V++R +GK+ R K PKIQRL+TP
Sbjct: 130 PRKLGPKRANNIKKLFGLKKEDDPILIKKSVIRRTFKTAKGKD----RTKCPKIQRLITP 185
Query: 201 VVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKE 91
+ +++ EY K L++ KK+
Sbjct: 186 ERILRKKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQ 222
>UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5;
Plasmodium|Rep: 40S ribosomal protein S6, putative -
Plasmodium vivax
Length = 391
Score = 218 bits (532), Expect = 1e-55
Identities = 115/219 (52%), Positives = 140/219 (63%)
Frame = -1
Query: 723 QKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSR 544
QK E+ DE KL F EKR+G V D +G+E+ GYV R+ GGNDKQGFPM QGVLTN+R
Sbjct: 54 QKSIEIDDEKKLLPFMEKRIGNVVPGDSIGEEFLGYVFRITGGNDKQGFPMMQGVLTNNR 113
Query: 543 VRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRR 364
VRLL KG CYRPR+ GE++RKSVRGCIV +LS L L +V+KG EIPGLTD V ++
Sbjct: 114 VRLLFKKGMKCYRPRKKGEKRRKSVRGCIVGQDLSALNLTLVKKGTNEIPGLTDKAVGKK 173
Query: 363 LGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXX 184
LGPKRA+KIRKLFNL K DDVR+YV+ R + +N K R PKIQRLVT L
Sbjct: 174 LGPKRATKIRKLFNLDKTDDVRKYVIGRAI-----SKNGKNRFIKPKIQRLVTEKRLLRK 228
Query: 183 XXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEE 67
K EY K+L + + E + E+
Sbjct: 229 RTLIAKKEKRRLEKKKVIKEYKKVLNKYRNELLTKTDED 267
>UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila
melanogaster|Rep: Isoform B of P29327 - Drosophila
melanogaster (Fruit fly)
Length = 200
Score = 182 bits (442), Expect(2) = 4e-47
Identities = 98/171 (57%), Positives = 117/171 (68%)
Frame = -1
Query: 735 ATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVL 556
ATGCQKLFEVVDEHKLR+FYEKRMG VEAD LGDEWKGY LR+AGGNDKQGFPMKQGVL
Sbjct: 9 ATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQGFPMKQGVL 68
Query: 555 TNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGN 376
T+ R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K
Sbjct: 69 THGRLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS--------- 118
Query: 375 VPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 223
P RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 119 -PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 161
Score = 29.9 bits (64), Expect(2) = 4e-47
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -1
Query: 129 AEYAKLLAQRKKESKVRR 76
AEY KLL +RKKESK R
Sbjct: 165 AEYVKLLVKRKKESKANR 182
>UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein S6e,
putative - Trichomonas vaginalis G3
Length = 216
Score = 180 bits (439), Expect = 3e-44
Identities = 94/214 (43%), Positives = 132/214 (61%), Gaps = 1/214 (0%)
Frame = -1
Query: 729 GCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTN 550
G Q + ++ D L YEKR+G ++E ++LG ++KGY+ R+ GG DKQGFPMKQGV+T
Sbjct: 11 GTQVVVDIDDPAALNALYEKRVGQDIEGEKLGGQFKGYLFRIGGGFDKQGFPMKQGVITP 70
Query: 549 SRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVP 370
R+RLL+ G SCYRPR+DGERKRK+VRGCI+ +S L V+++KG +EI GLT VP
Sbjct: 71 RRIRLLLKTGASCYRPRKDGERKRKTVRGCIISDEISALHCVVLQKGEKEIDGLTTTAVP 130
Query: 369 RRLGPKRASKIRKLFNLS-KEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVL 193
RR GPKRAS +R +F ++ + D + V+KR K GK +PK+QRL+T +
Sbjct: 131 RRFGPKRASTLRAMFGITDSKFDASKLVLKR--EVKPGK------FTSPKVQRLITARRV 182
Query: 192 QXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKE 91
K +Y LL Q++K+
Sbjct: 183 ARKNRMLKERKEKREATKKKAEQYQALLKQQQKQ 216
>UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba
histolytica|Rep: Ribosomal protein S6 - Entamoeba
histolytica
Length = 162
Score = 180 bits (437), Expect = 4e-44
Identities = 82/152 (53%), Positives = 114/152 (75%)
Frame = -1
Query: 735 ATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVL 556
ATG K F+ +E R F +KR+G EV+A LGDE+KGY+L++ GG DK GFPM GV
Sbjct: 8 ATGRIKKFDFEEEKNYRPFLDKRIGQEVDASSLGDEFKGYILKITGGCDKDGFPMMTGVA 67
Query: 555 TNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGN 376
TN+RVRLL+ + CY+P R+GER+RK+VRG IV ++SVL ++V+KG EI G+T+
Sbjct: 68 TNNRVRLLLDGRNGCYKPLRNGERRRKTVRGAIVAGDISVLNTIVVKKGEGEIEGVTNDA 127
Query: 375 VPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR 280
+P R GP+RAS RKLFNLS++DDV+++V++R
Sbjct: 128 LPMRAGPQRASHFRKLFNLSQKDDVKKFVIRR 159
>UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9;
Trypanosomatidae|Rep: 40S ribosomal protein S6 -
Leishmania major
Length = 249
Score = 177 bits (431), Expect = 2e-43
Identities = 98/220 (44%), Positives = 136/220 (61%), Gaps = 3/220 (1%)
Frame = -1
Query: 729 GCQKLFEVVDEHKLRI-FYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLT 553
G K FE+ DE R+ + R+G EV+ G E+KGY+ R+ GG+DK GFPM GVL
Sbjct: 11 GTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKDGFPMVPGVLA 70
Query: 552 NSRVRLLMSKGHSCYRPRR--DGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDG 379
+SRV LL+ +G + R GER+RK+VRGC++ ++++++ + I + G Q I G+TD
Sbjct: 71 SSRVSLLVKRGAIGFNTFRGYQGERRRKNVRGCVLASDIALVNVTISKVGDQPIEGVTDT 130
Query: 378 NVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPV 199
PRRLGPKRASKIRKLFNLS+ +DVR+YVV+R + K GK K R KAPKIQRL+TP
Sbjct: 131 TAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRRV-VKSGK---KDRLKAPKIQRLITPR 186
Query: 198 VLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVR 79
V + EY +L+A ++ + R
Sbjct: 187 VKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQR 226
>UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_64_20707_19961 - Giardia lamblia
ATCC 50803
Length = 248
Score = 157 bits (382), Expect = 2e-37
Identities = 90/223 (40%), Positives = 125/223 (56%), Gaps = 5/223 (2%)
Frame = -1
Query: 732 TGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLT 553
TG K + D K + + RM +E + LG+E+ G R+ GGND QGFPM QGVL
Sbjct: 16 TGANKSLMIEDFRKSQTIHGLRMASEFDGAALGEEYAGCTFRITGGNDAQGFPMYQGVLK 75
Query: 552 NSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNV 373
+ R RLL+ +G CY RR+GERKRKS+RGCIV +L L++V+V G + +PGLTD V
Sbjct: 76 SQRARLLLRQGAKCYLHRRNGERKRKSIRGCIVGPDLHALSVVLVDAGDKTLPGLTDVVV 135
Query: 372 PRRLGPKRASKIRKLFNL--SKEDDVRRYVVKRV---LPAKEGKENAKPRHKAPKIQRLV 208
P+RL PKRASKIR+LF L +K D + +V + L + +N + + K PK+QR+V
Sbjct: 136 PKRLVPKRASKIRRLFGLPTTKVDPKDQMLVCELIKELGHEVTLKNGEKKLKYPKVQRVV 195
Query: 207 TPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVR 79
T EY LL++ K+ +R
Sbjct: 196 TDEKYARKQRVIAEKKEIMRKSLQQLEEYKALLSRMGKQHNIR 238
>UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 304
Score = 144 bits (348), Expect = 3e-33
Identities = 80/137 (58%), Positives = 94/137 (68%), Gaps = 2/137 (1%)
Frame = -1
Query: 609 RVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLA 430
R GGNDKQG VL RVR+LM KGH YRPR+DGE KRKS+RGCIV ++ VLA
Sbjct: 62 RFTGGNDKQG------VLFKGRVRILMRKGHKGYRPRKDGEMKRKSIRGCIVGQDIRVLA 115
Query: 429 LVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKE-GKE 253
L +V+KGA EI GLTD NVPRRLGPKR +K+R+LF K D RV+ ++E G +
Sbjct: 116 LQVVKKGANEIAGLTDQNVPRRLGPKRLTKLRRLFGFKKAD--------RVISSEEHGPQ 167
Query: 252 N-AKPRHKAPKIQRLVT 205
K R KAPKIQRLVT
Sbjct: 168 RYGKKRQKAPKIQRLVT 184
>UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillardia
theta|Rep: 40S ribosomal protein S6 - Guillardia theta
(Cryptomonas phi)
Length = 209
Score = 134 bits (325), Expect = 2e-30
Identities = 74/184 (40%), Positives = 114/184 (61%), Gaps = 2/184 (1%)
Frame = -1
Query: 735 ATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVL 556
+TG Q E+ DE KLRI Y K++ ++++ +G EW + + GG DKQGFPMK+G+L
Sbjct: 9 STGVQHTIEIDDEDKLRILYGKKLTSKIDGKIIGKEWDKSIFIITGGQDKQGFPMKEGIL 68
Query: 555 TNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTD 382
+ SRV++L+ KG + R + GER RKSVRGCIV +SVL + ++ ++ +T+
Sbjct: 69 SPSRVKILLKKGSTGCRGYKMKKGERCRKSVRGCIVSPEISVLNIKLLTNKNDDLL-ITN 127
Query: 381 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTP 202
N + L KR+S +RK+ L+K DD+R++ +K AK+ K KIQRL+TP
Sbjct: 128 KNSEKTLTHKRSSNLRKVLCLTKTDDIRKHYIK---IAKDFKNKV-------KIQRLITP 177
Query: 201 VVLQ 190
+ +Q
Sbjct: 178 IKIQ 181
>UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S6 -
Encephalitozoon cuniculi
Length = 203
Score = 124 bits (298), Expect = 3e-27
Identities = 65/170 (38%), Positives = 107/170 (62%), Gaps = 2/170 (1%)
Frame = -1
Query: 717 LFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVR 538
+FE+ +++R+ Y+K++G + + LG+E++G ++ + GG+D QGFPM G LT RVR
Sbjct: 1 MFEIERRNEVRL-YDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVR 59
Query: 537 LLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLG 358
L+SKG + YR RR G R+RKSVRG IV + VL L+I+R G +EI GLT+
Sbjct: 60 PLLSKGDAGYRCRRKGVRRRKSVRGSIVSEEICVLNLIILRPGEKEIDGLTNAVNDVSHL 119
Query: 357 PKRASKIRKLFNLSKEDDVRRYVVKRVLPAK--EGKENAKPRHKAPKIQR 214
P++ K+RK+F + E+ ++ +L ++ + K+ K RH +++R
Sbjct: 120 PRKEKKLRKMFGVPDEEKNVVGYIRNILKSECDDPKKIPKIRHNGKRMKR 169
>UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S ribosomal
protein S6; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S6 - Canis familiaris
Length = 154
Score = 108 bits (259), Expect = 2e-22
Identities = 47/69 (68%), Positives = 56/69 (81%)
Frame = -1
Query: 735 ATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVL 556
ATGCQKL E DE K R FYEK M +EV AD LG+EWKGY++R++GGNDKQGFPMKQ VL
Sbjct: 9 ATGCQKLIEADDERKPRTFYEKHMASEVAADALGEEWKGYMVRISGGNDKQGFPMKQDVL 68
Query: 555 TNSRVRLLM 529
T+ R+ LL+
Sbjct: 69 THDRIHLLL 77
Score = 63.3 bits (147), Expect = 6e-09
Identities = 38/71 (53%), Positives = 47/71 (66%), Gaps = 6/71 (8%)
Frame = -1
Query: 405 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDD-----VRRYVVKRVLP-AKEGKENAK 244
++IPGLTD PR +GPKRAS+IRKLFNLSKEDD + R + KR+ KE KE K
Sbjct: 80 KDIPGLTDTTEPRHVGPKRASRIRKLFNLSKEDDAAQNSILRKIRKRIYKRMKEAKE--K 137
Query: 243 PRHKAPKIQRL 211
+ + K QRL
Sbjct: 138 RQEQIAKRQRL 148
>UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila
melanogaster|Rep: IP07914p - Drosophila melanogaster
(Fruit fly)
Length = 147
Score = 62.5 bits (145), Expect(2) = 1e-11
Identities = 43/108 (39%), Positives = 59/108 (54%)
Frame = -1
Query: 546 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPR 367
R+RLL K HSC+ PR + RK K+VR V+AN+S L LV+++K P
Sbjct: 19 RLRLL-KKIHSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKKNPS----------PC 67
Query: 366 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 223
RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 68 RLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 108
Score = 29.9 bits (64), Expect(2) = 1e-11
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -1
Query: 129 AEYAKLLAQRKKESKVRR 76
AEY KLL +RKKESK R
Sbjct: 112 AEYVKLLVKRKKESKANR 129
>UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo
sapiens|Rep: Ribosomal protein S6 - Homo sapiens (Human)
Length = 91
Score = 64.9 bits (151), Expect = 2e-09
Identities = 29/38 (76%), Positives = 30/38 (78%)
Frame = -1
Query: 735 ATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWK 622
ATGCQKL EV DE KLR FYEKRM EV AD LG+EWK
Sbjct: 9 ATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWK 46
>UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2;
Methanobacteriaceae|Rep: 30S ribosomal protein S6e -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 130
Score = 62.5 bits (145), Expect = 1e-08
Identities = 33/91 (36%), Positives = 55/91 (60%)
Frame = -1
Query: 669 RMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDG 490
++G E LG KGY LR+ GG+DK GFPMK+ V R + L++ G + ++P + G
Sbjct: 30 KIGEEFNGGVLG--LKGYKLRITGGSDKNGFPMKEDVDGTRRFKSLVN-GGTGFKPTKKG 86
Query: 489 ERKRKSVRGCIVDANLSVLALVIVRKGAQEI 397
R+RK+VRG + ++S + + + +G Q +
Sbjct: 87 LRRRKTVRGNTIADDISQINVKVSERGEQTL 117
>UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S6E - Ignicoccus hospitalis KIN4/I
Length = 236
Score = 62.1 bits (144), Expect = 1e-08
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Frame = -1
Query: 720 KLFEV-VDEHKLRIFYEKRMGAEVEADQLGDEW-KGYVLRVAGGNDKQGFPMKQGVLTNS 547
K F++ ++ R F KR+G V A LG E KG L + GG+D+ GFPM+ +
Sbjct: 133 KAFQITIEGENARKFIGKRIGETVPASILGIETLKGLQLEIRGGSDESGFPMRPDIPGPV 192
Query: 546 RVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRK 412
+ R L+S G + PR GER+RK+VRG + ++ + IV++
Sbjct: 193 KKRALLS-GPPGFWPREKGERRRKTVRGNTISEDIVQINTKIVKQ 236
>UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC1AEC UniRef100 entry -
Rattus norvegicus
Length = 227
Score = 60.9 bits (141), Expect = 3e-08
Identities = 60/172 (34%), Positives = 87/172 (50%), Gaps = 3/172 (1%)
Frame = -1
Query: 723 QKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSR 544
Q L EV + KLR FYEK M E+ + +E N + F MKQ VL + R
Sbjct: 13 QILTEVDGKCKLRAFYEKCMTTEITVNFSCEE-----------NADKIFSMKQEVLIHFR 61
Query: 543 VRLLMSKGHS-CYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPR 367
V LL++ HS Y+P R E S++ V +S+L +VI+ G ++IPG T +
Sbjct: 62 VHLLLNNLHSYIYKPLRTREMNYTSLQDA-VKLPISLLNMVIIINGRKDIPGQT-----K 115
Query: 366 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAK--EGKENAKPRHKAPKIQ 217
R PKR +I+ F++S +K VL K + K++ KPR K K+Q
Sbjct: 116 RWAPKRWRRIQS-FSVS---------LKTVLSTKKPQNKDSKKPRPKTHKVQ 157
>UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Archaeoglobus fulgidus
Length = 129
Score = 60.1 bits (139), Expect = 6e-08
Identities = 36/105 (34%), Positives = 61/105 (58%)
Frame = -1
Query: 723 QKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSR 544
QK+ E + ++L K++G +V + + D Y L++ GG D+ GFPM+ + +R
Sbjct: 17 QKVVEGANANRL---IGKQIG-DVISGTIVDLPPDYELKITGGTDRDGFPMRPDLPGTAR 72
Query: 543 VRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 409
RLL+S G +RP+ G RKRK VRG ++ ++ + V+V+ G
Sbjct: 73 RRLLLSGGVG-FRPKEKGLRKRKGVRGRVISKDILQINTVVVKHG 116
>UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 211
Score = 58.8 bits (136), Expect = 1e-07
Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 4/119 (3%)
Frame = +1
Query: 289 DITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQDREIGVNNTST 468
D+ +IFF + E+LT+ T T + I ++R+ L N++ Q + ++ +T
Sbjct: 95 DVLADVIFFGQSEELTNLARTLRTTETRHFGIGEARDVGVALLDNDQVQHGNVLGDDATT 154
Query: 469 ----N*FTFSLSIAARSVT*VAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALPFI 633
+ FT + ++AA + AL H++ +T V Q AL H E+LLVV D + ++LPF+
Sbjct: 155 ARLASAFTLASAVAAEAAR--ALGHEQEHTLVRQHALLHAEALLVVTTHDLEDVSLPFL 211
>UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1;
Thermococcus kodakarensis KOD1|Rep: 30S ribosomal
protein S6e - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 125
Score = 58.0 bits (134), Expect = 2e-07
Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 9/94 (9%)
Frame = -1
Query: 672 KRMGAEVEADQLG---DEWKGYV------LRVAGGNDKQGFPMKQGVLTNSRVRLLMSKG 520
+R+G E+ A +LG E G L++ GG DK GFPM+ V RV++L+S+G
Sbjct: 32 RRIGEEIPASELGLNLSEIFGEEIPADAKLKITGGTDKDGFPMRPDVHGPRRVKILLSRG 91
Query: 519 HSCYRPRRDGERKRKSVRGCIVDANLSVLALVIV 418
+RPR GER++K+V G + N+ + + IV
Sbjct: 92 PG-FRPRERGERRKKTVHGNTISPNIVQVNMKIV 124
>UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Pyrococcus
furiosus
Length = 125
Score = 56.0 bits (129), Expect = 9e-07
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 9/79 (11%)
Frame = -1
Query: 672 KRMGAEVEADQL--------GDEWKGYV-LRVAGGNDKQGFPMKQGVLTNSRVRLLMSKG 520
KR+G ++ A +L G E+ V L + GG DK GFPM+ + RVR+L+SKG
Sbjct: 32 KRIGDQIPAKELNINLNELFGKEFPEDVKLEIRGGTDKDGFPMRPDIHGPRRVRVLLSKG 91
Query: 519 HSCYRPRRDGERKRKSVRG 463
+RP+ GER++K+VRG
Sbjct: 92 PG-FRPKEKGERRKKTVRG 109
>UniRef50_Q980A6 Cluster: 30S ribosomal protein S6e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S6e -
Sulfolobus solfataricus
Length = 214
Score = 54.8 bits (126), Expect = 2e-06
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
Frame = -1
Query: 705 VDEHKLRIFYEKRMGAEVEADQL-GDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLM 529
VD++K ++G EA+QL G K L++ GG+D GFPM+ V+ ++ ++L+
Sbjct: 121 VDQNKATNLVGLKIGDVFEANQLIGLPVK---LKITGGSDNSGFPMRFDVIGAAKRKILL 177
Query: 528 SKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVR 415
S G + P +GER+RK++RG + + + +IVR
Sbjct: 178 S-GPPGFYPNENGERRRKTIRGNTISQEIVQINTIIVR 214
>UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Methanococcus
maripaludis
Length = 124
Score = 54.8 bits (126), Expect = 2e-06
Identities = 27/94 (28%), Positives = 55/94 (58%)
Frame = -1
Query: 672 KRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRD 493
K++G E+ + E +GY L++ GG+D+ GF M+ + ++R+L+ +G Y +
Sbjct: 28 KKIGDEISGSIV--ELEGYKLKITGGSDRCGFAMRHDIHGAMKMRVLLKEGPG-YNVKEK 84
Query: 492 GERKRKSVRGCIVDANLSVLALVIVRKGAQEIPG 391
G R+RKS+RG + +++++ +V G+ + G
Sbjct: 85 GLRRRKSLRGNTISKDITLINTKVVEYGSAPLGG 118
>UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S6e -
Halobacterium salinarium (Halobacterium halobium)
Length = 131
Score = 54.4 bits (125), Expect = 3e-06
Identities = 33/106 (31%), Positives = 56/106 (52%)
Frame = -1
Query: 705 VDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMS 526
VD F + +GA V+ +G + GY + + GG+D G PM++ V + + +L+
Sbjct: 21 VDGQDANRFIGREIGAAVDGGAVGLD--GYTVEITGGSDDAGRPMREDVDGSDLMEVLL- 77
Query: 525 KGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGL 388
+G + + P DGERKR +VRG V ++ L + I G + + L
Sbjct: 78 EGGAGFNPDEDGERKRVTVRGKEVSEAVAQLNVAIDEHGEEPVAEL 123
>UniRef50_A2BJZ7 Cluster: 30S ribosomal protein S6e; n=2;
Desulfurococcales|Rep: 30S ribosomal protein S6e -
Hyperthermus butylicus (strain DSM 5456 / JCM 9403)
Length = 217
Score = 51.6 bits (118), Expect = 2e-05
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = -1
Query: 621 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 442
GY L + GG+D GFPM + + R+L+S G + PR GER+RK+VRG + ++
Sbjct: 146 GYKLLIRGGSDNSGFPMLPSIPGPVKKRVLLS-GPPGFHPREKGERRRKTVRGNTITHDI 204
Query: 441 SVLALVIV 418
+ VIV
Sbjct: 205 VQINTVIV 212
>UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella
natans|Rep: Ribosomal protein S6 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 239
Score = 51.2 bits (117), Expect = 3e-05
Identities = 34/128 (26%), Positives = 68/128 (53%), Gaps = 2/128 (1%)
Frame = -1
Query: 702 DEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSK 523
D+ + +++G +E LG+++ + GG+DKQGF +K+ + T R+++ + K
Sbjct: 19 DDEFIEHIIGRKIGDTIEGSILGEDFSRNEFLINGGHDKQGFLLKKNLNTFERLKINVKK 78
Query: 522 GHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKR 349
G R +R K+++VRG I+ + +S + LV + +E + ++L KR
Sbjct: 79 GSLGNRSHFKRKNLTKKRTVRGGILSSEISSINLVKLPNNVKE--SSVFPSKEQKLA-KR 135
Query: 348 ASKIRKLF 325
+K++ LF
Sbjct: 136 VTKLKTLF 143
>UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S6e -
Methanoregula boonei (strain 6A8)
Length = 143
Score = 49.6 bits (113), Expect = 8e-05
Identities = 26/69 (37%), Positives = 43/69 (62%)
Frame = -1
Query: 672 KRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRD 493
K++G EV+A LG GY + + GG+D+ G P ++ + R +LL+++G + P +
Sbjct: 32 KKIGDEVDAGPLG--LAGYKILITGGSDQTGTPARKSLPGAGRRKLLLAEGVG-FHPVME 88
Query: 492 GERKRKSVR 466
GERKRK +R
Sbjct: 89 GERKRKMIR 97
>UniRef50_Q9Y9B6 Cluster: 30S ribosomal protein S6e; n=1; Aeropyrum
pernix|Rep: 30S ribosomal protein S6e - Aeropyrum pernix
Length = 235
Score = 48.0 bits (109), Expect = 2e-04
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = -1
Query: 621 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV 454
G ++ GG D G PM GV + R ++L++ G + PR GER+RKSVRG ++
Sbjct: 155 GLKFKIRGGTDATGIPMHPGVPGSGRYKVLLA-GPPGFHPRERGERRRKSVRGRMI 209
>UniRef50_A0RYX5 Cluster: Ribosomal protein S6E; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein S6E - Cenarchaeum
symbiosum
Length = 133
Score = 45.2 bits (102), Expect = 0.002
Identities = 28/68 (41%), Positives = 39/68 (57%)
Frame = -1
Query: 666 MGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 487
+G+E +A LG E K +R+ GG+DK G PM+ V +R +L+S+G R G
Sbjct: 39 IGSEADATALGLEGK---IRITGGSDKSGVPMRPDVHGPARKYVLLSRGVG-LRDAERGG 94
Query: 486 RKRKSVRG 463
R RK VRG
Sbjct: 95 RTRKLVRG 102
>UniRef50_Q8PU79 Cluster: 30S ribosomal protein S6e; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 136
Score = 44.4 bits (100), Expect = 0.003
Identities = 25/78 (32%), Positives = 42/78 (53%)
Frame = -1
Query: 621 GYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANL 442
GY +++ GG D GF MK + R R+L + G Y P+ G+R+RK +RG + ++
Sbjct: 47 GYKVQITGGCDGSGFVMKPDLPGPRRQRILTATGVG-YVPKLPGQRRRKMMRGKEIAPDI 105
Query: 441 SVLALVIVRKGAQEIPGL 388
+ +V G++ I L
Sbjct: 106 VQVNAKVVEYGSKSIKAL 123
>UniRef50_Q978W7 Cluster: 30S ribosomal protein S6e; n=5;
Thermoplasmatales|Rep: 30S ribosomal protein S6e -
Thermoplasma volcanium
Length = 128
Score = 44.0 bits (99), Expect = 0.004
Identities = 28/92 (30%), Positives = 53/92 (57%)
Frame = -1
Query: 672 KRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRD 493
+++G EV D + + GY +++ GG+ GF M+ + T + ++L+ K S YR ++
Sbjct: 32 RKIGEEV--DGVFFDLVGYKMKITGGSSVDGFAMRPDLQTQGKKQILV-KYTSGYR-GKN 87
Query: 492 GERKRKSVRGCIVDANLSVLALVIVRKGAQEI 397
G RKR + RG I+ ++++ + L I + G I
Sbjct: 88 GIRKRITARGSIIGSDITQINLKITQYGPTPI 119
>UniRef50_A6C4P7 Cluster: Pseudouridine synthase; n=1; Planctomyces
maris DSM 8797|Rep: Pseudouridine synthase -
Planctomyces maris DSM 8797
Length = 352
Score = 42.7 bits (96), Expect = 0.009
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Frame = -1
Query: 588 KQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKG 409
++G K+GV S ++ L +G S + E + + +R + V+ LV +R G
Sbjct: 171 RKGVRFKEGVFRVSGLKYLKKQGKSAFLELTLHEGQNREIRRMMARIGHKVIQLVRIRFG 230
Query: 408 AQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKP-RHK 232
+ L G RRL K+R+L N D+R ++GK+NA P + +
Sbjct: 231 PLNLGKLKTGE-SRRLSDTELKKLRQLLNEKHSPDIRH---------RKGKKNAAPAKTR 280
Query: 231 APK 223
AP+
Sbjct: 281 APR 283
>UniRef50_Q8ZX25 Cluster: 30S ribosomal protein S6e; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S6e -
Pyrobaculum aerophilum
Length = 148
Score = 41.9 bits (94), Expect = 0.016
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Frame = -1
Query: 732 TGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEW---KGYVLRVAGGNDKQGFPMKQG 562
+G + FE+ D R F ++G E++ L D KG +R+ GG+ +G PM G
Sbjct: 13 SGKARQFEIKDPLAQR-FIGLKIGDELDGVILKDLIELPKGAKIRITGGSGIEGAPMHPG 71
Query: 561 VLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRG-CIVDANLSVLALVIVRKGAQEIPGLT 385
V + + +++ G Y P + G +K+K VRG I D+ + + A+++ K P +
Sbjct: 72 VPGPVK-KYILADGPPGYWPPKKGMKKKKLVRGNTISDSIVQINAVIVYPKDYTGPPAIP 130
Query: 384 DG 379
G
Sbjct: 131 LG 132
>UniRef50_A7DQN0 Cluster: Ribosomal protein S6e; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein S6e
- Candidatus Nitrosopumilus maritimus SCM1
Length = 137
Score = 40.7 bits (91), Expect = 0.037
Identities = 25/75 (33%), Positives = 40/75 (53%)
Frame = -1
Query: 666 MGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGE 487
+G E +A +G K L++ GG+DK G PM+ + +R +L+SKG + G+
Sbjct: 33 LGQETDASVVGLNGK---LKLTGGSDKSGVPMRNDIHGAARKYVLLSKGVG-LQDAEKGQ 88
Query: 486 RKRKSVRGCIVDANL 442
R RK +RG V +
Sbjct: 89 RVRKLMRGNTVSEEI 103
>UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S6e -
Nanoarchaeum equitans
Length = 126
Score = 35.9 bits (79), Expect = 1.1
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = -1
Query: 678 YEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGV 559
Y K++G ++ ++G + GY L++ GG+D GFPM++ V
Sbjct: 31 YGKKIGDTIDGSKIGLD--GYELKITGGSDIAGFPMRKEV 68
>UniRef50_Q87BM0 Cluster: Putative uncharacterized protein; n=1;
Xylella fastidiosa Temecula1|Rep: Putative
uncharacterized protein - Xylella fastidiosa (strain
Temecula1 / ATCC 700964)
Length = 109
Score = 35.1 bits (77), Expect = 1.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 622 GLCTSCRWRQRQARIPDETGRPDKQPCSSSDVKG 521
G C RWR ++ + DE G + PC+ DV+G
Sbjct: 17 GACCMARWRCQEINVTDEVGYGMRLPCTPHDVRG 50
>UniRef50_Q8TRJ6 Cluster: Glycosyltransferase; n=1; Methanosarcina
acetivorans|Rep: Glycosyltransferase - Methanosarcina
acetivorans
Length = 812
Score = 34.3 bits (75), Expect = 3.2
Identities = 19/101 (18%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Frame = -1
Query: 576 PMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIV-DANLSVLALVIVRKGAQE 400
P K+ ++T++R ++L+ +SCY PR G+ + ++ + + ++++ +++ K Q
Sbjct: 405 PAKKNIITSNREKILVLATYSCYPPRGGGQHRLYNIYSLLAKEFDVTICSIIEANKQYQN 464
Query: 399 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRV 277
+ + D + + P+ R + K+ Y V +
Sbjct: 465 L--VLDNGLKQICIPQSTEHARYQWEAEKKVGANLYDVAMI 503
>UniRef50_A6L045 Cluster: Putative uncharacterized protein; n=1;
Bacteroides vulgatus ATCC 8482|Rep: Putative
uncharacterized protein - Bacteroides vulgatus (strain
ATCC 8482 / DSM 1447 / NCTC 11154)
Length = 541
Score = 33.5 bits (73), Expect = 5.6
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = -1
Query: 429 LVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV 289
L+ V +EI LT GNVP+ + R ++RK NLS EDD+ Y+
Sbjct: 494 LLRVNLSTKEISMLT-GNVPKTINMNRY-RLRKSLNLSSEDDLTDYL 538
>UniRef50_Q6N427 Cluster: Phytoene dehydrogenase-related protein;
n=24; Bacteria|Rep: Phytoene dehydrogenase-related
protein - Rhodopseudomonas palustris
Length = 590
Score = 33.1 bits (72), Expect = 7.4
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +3
Query: 555 SGRPVSSGILACRCRQ-RHEVHSPSIHRLTDQPL 653
SGRPV+SGILA C Q +++ +P HR + P+
Sbjct: 22 SGRPVTSGILASLCEQWQNQPRTPLSHRSGNLPM 55
>UniRef50_Q0IR54 Cluster: Os11g0676800 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os11g0676800 protein -
Oryza sativa subsp. japonica (Rice)
Length = 822
Score = 32.7 bits (71), Expect = 9.8
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = -1
Query: 480 RKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKE 310
+KS + C N ++ LV++RKG + LT G + K S RK+ N+SK+
Sbjct: 227 KKSSQSCSGRLNSYIVVLVMLRKGGWKSQQLTIGLARHEVAVKIRSLNRKIENISKD 283
>UniRef50_A2F5X7 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1146
Score = 32.7 bits (71), Expect = 9.8
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -1
Query: 384 DGNVPRRLGPKRASKIRK-LFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQR 214
D + + PK+ S +K + + S EDD K++L + + E KPR K+P+ +R
Sbjct: 1012 DSSDEEEIKPKQKSPQKKPILSSSSEDDAIPPPKKKLLDSSDDDEEIKPRQKSPQKKR 1069
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 725,976,977
Number of Sequences: 1657284
Number of extensions: 14595015
Number of successful extensions: 43891
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 42235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43837
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60911752460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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