Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13d11
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   268   6e-73
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   267   1e-72
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    26   4.9  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    26   6.5  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   6.5  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   8.6  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  268 bits (657), Expect = 6e-73
 Identities = 133/222 (59%), Positives = 163/222 (73%), Gaps = 1/222 (0%)
 Frame = -1

Query: 735 ATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVL 556
           A G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQGFPM QGVL
Sbjct: 9   ANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVL 68

Query: 555 TNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGN 376
              RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL I+++G Q+IPGLTD  
Sbjct: 69  LPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVT 128

Query: 375 VPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIQRLVTPV 199
           VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPKIQRLVTP 
Sbjct: 129 VPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTPR 185

Query: 198 VLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQ 73
            LQ                +   AE+A+L+A+R  E+K +R+
Sbjct: 186 TLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKRE 227


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  267 bits (655), Expect = 1e-72
 Identities = 133/222 (59%), Positives = 163/222 (73%), Gaps = 1/222 (0%)
 Frame = -1

Query: 735 ATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVL 556
           A G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQGFPM QGVL
Sbjct: 9   ANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQGFPMFQGVL 68

Query: 555 TNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGN 376
              RVRLL+  GH CYRPRRDGERKRKSVRGCIV  +L+VLAL IV++G Q+IPGLTD  
Sbjct: 69  LPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVT 128

Query: 375 VPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIQRLVTPV 199
           VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPKIQRLVTP 
Sbjct: 129 VPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVTPR 185

Query: 198 VLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQ 73
            LQ                +   AE+A+L+A+R  E+K +++
Sbjct: 186 TLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKKE 227


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 742 YPGNGMPEVVRSGGRAQASYLLR 674
           +PG+G+P +V    R  AS +LR
Sbjct: 866 FPGSGLPLIVNENTRLSASAMLR 888


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 2   FCGALWLELLESRIEAERLRLISSW 76
           F G++W E L S      L+LI SW
Sbjct: 247 FTGSIWYEFLCSASSVVALQLIRSW 271


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 320 LAKKMMYVVMSSNACSQLRKEKKTLNPDIRHL 225
           LAK ++     +N  +QLR +KK L  D++ L
Sbjct: 228 LAKMLVIYREKTNVFNQLRADKKKLKKDLKDL 259


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 304 IIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQD 438
           +I + K E +   GSTFG   +G       R++   L H+N  QD
Sbjct: 98  VIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDNDIQD 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,502
Number of Sequences: 5004
Number of extensions: 56967
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)