Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13d11
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 254 5e-68
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 253 1e-67
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296... 29 2.9
02_01_0295 - 1973115-1973404,1974138-1974663 29 2.9
07_01_0673 - 5044940-5045479,5046514-5046579 29 5.2
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702... 29 5.2
09_03_0216 - 13529869-13530894 28 6.8
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 254 bits (622), Expect = 5e-68
Identities = 132/227 (58%), Positives = 159/227 (70%), Gaps = 4/227 (1%)
Frame = -1
Query: 732 TGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLT 553
TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQGFPMKQGVLT
Sbjct: 10 TGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLT 69
Query: 552 NSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDG 379
+ RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD
Sbjct: 70 SGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTDT 129
Query: 378 NVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIQRLVT 205
PR GPKRASKIRKLFNL+K+DDVR+YV +R K GK+ + KAPKIQRLVT
Sbjct: 130 EKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVS----KAPKIQRLVT 185
Query: 204 PVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 64
P+ LQ KS AEY KLLAQR KE + RR E +
Sbjct: 186 PLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 253 bits (619), Expect = 1e-67
Identities = 132/227 (58%), Positives = 158/227 (69%), Gaps = 4/227 (1%)
Frame = -1
Query: 732 TGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLT 553
TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQGFPMKQGVLT
Sbjct: 10 TGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLT 69
Query: 552 NSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDG 379
RVRLL+ +G C+R RRDGER+RKSVRGCIV +LSV+ LVIV+KG ++PGLTD
Sbjct: 70 AGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDT 129
Query: 378 NVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIQRLVT 205
PR GPKRASKIRKLFNLSK+DDVR+YV +R K GK+ + KAPKIQRLVT
Sbjct: 130 EKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVS----KAPKIQRLVT 185
Query: 204 PVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 64
P+ LQ KS AEY KLLAQR KE + RR E +
Sbjct: 186 PLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRERRSESL 232
>10_07_0139 +
13327851-13327880,13327999-13329049,13329089-13329648,
13329757-13329904,13330935-13331024,13331148-13331208,
13331301-13331450,13331571-13331629,13332148-13332282,
13333028-13333119,13333210-13333278
Length = 814
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/53 (24%), Positives = 32/53 (60%)
Frame = -1
Query: 366 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLV 208
++ PK+A ++ + + +DD+ R V + +P+++ + A+ ++PK +R V
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPKRERRV 377
>02_01_0295 - 1973115-1973404,1974138-1974663
Length = 271
Score = 29.5 bits (63), Expect = 2.9
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = -1
Query: 522 GHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLT--DGNVPRRLGPKR 349
G S + + G ++ RG + + S AL + GA PG +P R+G +
Sbjct: 167 GKSIGKGFQGGIKRHNFKRGLMTHGSKSHRALGSI--GAGTTPGRVYKGKKMPGRMGGTK 224
Query: 348 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEG 259
+KIRKL + ++D++ ++K +P K G
Sbjct: 225 -TKIRKLKIVKIDNDLKVVMIKGAVPGKPG 253
>07_01_0673 - 5044940-5045479,5046514-5046579
Length = 201
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 113 CLHRERRNPRCVARKRSNAGAQLQCVIPRALAR 15
C+ R RR R R+R N AQL + A+AR
Sbjct: 39 CIRRRRRGIRGGRRRRENGKAQLPVCLDAAVAR 71
>01_02_0020 -
10269252-10269314,10269442-10269483,10269759-10270244,
10270338-10270421,10270491-10270556,10270718-10270810,
10270901-10271987,10273338-10273362,10273881-10273899
Length = 654
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 109 CTEKEGIQGASPGRDQTQALSFN 41
C KE IQGA+PG Q Q + N
Sbjct: 599 CLNKEAIQGANPGDSQMQIIMQN 621
>09_03_0216 - 13529869-13530894
Length = 341
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 646 SLYFGAHALFVKDTKLVLVHHFEQLLASRCXGT 744
+L+ G HA +K +L + + + LLA RC GT
Sbjct: 309 ALFTGTHASMMKKIELEWMQNRKVLLAPRCCGT 341
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,331,946
Number of Sequences: 37544
Number of extensions: 430290
Number of successful extensions: 1272
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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