Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13d11
         (744 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    27   0.61 
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    26   1.1  
AJ459961-1|CAD31060.1|  700|Anopheles gambiae prophenoloxidase 8...    25   3.3  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    25   3.3  
AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase...    25   3.3  
AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase...    25   3.3  
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    24   4.3  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    24   4.3  
AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.      24   5.7  
AJ618918-1|CAF01997.1|  228|Anopheles gambiae putative odorant-b...    24   5.7  
AM042695-1|CAJ14970.1|  396|Anopheles gambiae 3-hydroxykynurenin...    23   10.0 
AF004915-1|AAB94671.1|  688|Anopheles gambiae pro-phenol oxidase...    23   10.0 

>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 0.61
 Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 5/126 (3%)
 Frame = +3

Query: 360 LDGGVHFHQSIQEFPGHPCAQ*QEPRPRDWRQQYIHELIYVFSLHRGAVCNMSGPLTSED 539
           +DGG++   S++ FPG+          + +  +   +  ++F LH   V N    L  ED
Sbjct: 167 VDGGLNIPHSVKRFPGYSAEN------KSFNAEMHRD--HIFGLH---VANYMRTLEEED 215

Query: 540 EHGCLS--GRPVSSGILACRCRQRHEVHSPSIHRLTD---QPLLRRPCAFRKRYEACARP 704
           E        + +S GI A      ++    SI ++      P  R P +   R+ +C  P
Sbjct: 216 EEAFKRQFSKYISLGIKADDIENIYKNAHASIRKIPPSRRNPRRRSPRS-GGRWPSCRSP 274

Query: 705 PLRTTS 722
           P R  S
Sbjct: 275 PARRRS 280


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = +2

Query: 377 FPSVNPGISWAPLRTITRAKTERLASTIHPR 469
           +P +  G + APLR+I   + +++A+++HPR
Sbjct: 408 WPDLGVG-NMAPLRSIGLTELDQIAASMHPR 437


>AJ459961-1|CAD31060.1|  700|Anopheles gambiae prophenoloxidase 8
           protein.
          Length = 700

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 742 YPGNGMPEVVRSGGRAQASYLLRK 671
           YP +G P+VVR   R +  Y + +
Sbjct: 230 YPASGPPDVVRKDRRGELFYYMHQ 253


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
           protein.
          Length = 1645

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 435 RPRDWRQQYIHELIYVFSLHRGAVCNMSGPLTSEDEHGCLS 557
           +P+D+R+  +  L  VF   +GA+ ++    T ED  G  S
Sbjct: 856 KPKDFRKHSLLPLNNVFDRIKGALPHLKKSPTKEDATGGFS 896


>AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase
           isoform 2 protein.
          Length = 484

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 645 QPLLRRPCAFRKRYEACAR 701
           Q  +RR CAF K++EA  R
Sbjct: 379 QAHIRRHCAFAKQFEALCR 397


>AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase
           isoform 1 protein.
          Length = 515

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 645 QPLLRRPCAFRKRYEACAR 701
           Q  +RR CAF K++EA  R
Sbjct: 410 QAHIRRHCAFAKQFEALCR 428


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 597 RQRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIP 731
           +Q+ ++HS  +   +     RRP        + + P L TTSG P
Sbjct: 25  QQQQQLHSADVPHSSTSQSSRRPQHSSTSASSSSVPTLPTTSGEP 69


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 597 RQRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIP 731
           +Q+ ++HS  +   +     RRP        + + P L TTSG P
Sbjct: 25  QQQQQLHSADVPHSSTSQSSRRPQHSSTSASSSSVPTLPTTSGEP 69


>AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.
          Length = 565

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 430 SCYCAQGCPGN 398
           +CYC   CPGN
Sbjct: 73  TCYCEGHCPGN 83


>AJ618918-1|CAF01997.1|  228|Anopheles gambiae putative
           odorant-binding protein OBPjj2 protein.
          Length = 228

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 569 FIGNPCLSLPPATRS 613
           F GNPCL  PP  ++
Sbjct: 55  FAGNPCLKGPPVPKN 69


>AM042695-1|CAJ14970.1|  396|Anopheles gambiae 3-hydroxykynurenine
           transaminase protein.
          Length = 396

 Score = 23.0 bits (47), Expect = 10.0
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -1

Query: 420 VRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSK 313
           V  GAQ++ G   G  P  + PK    IR     SK
Sbjct: 199 VYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSK 234


>AF004915-1|AAB94671.1|  688|Anopheles gambiae pro-phenol oxidase
           subunit 1 protein.
          Length = 688

 Score = 23.0 bits (47), Expect = 10.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 742 YPGNGMPEVVRSGGRAQASYLL 677
           YPG+G  EVVR   R +  + +
Sbjct: 215 YPGDGPDEVVRKDRRGELFFYM 236


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 752,429
Number of Sequences: 2352
Number of extensions: 15905
Number of successful extensions: 36
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76507752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)