Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13d11
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   256   1e-68
AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    30   1.5  
U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine rece...    28   8.0  
AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical...    28   8.0  
AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascula...    28   8.0  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  256 bits (627), Expect = 1e-68
 Identities = 129/215 (60%), Positives = 152/215 (70%)
 Frame = -1

Query: 735 ATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVL 556
           ATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+ GGNDKQGFPMKQG+L
Sbjct: 9   ATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQGFPMKQGIL 68

Query: 555 TNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGN 376
           TN RVRLL+ KG SCYR R++GERKRKSVRGCIVDAN+S L+LVIV+KG  EI GLTD  
Sbjct: 69  TNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDSV 128

Query: 375 VPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVV 196
           +PR+LGPKRASKIRKLFNL+K DDV +YV+       +G      +  APKIQRL+TP  
Sbjct: 129 LPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDG----VTKTIAPKIQRLITPAR 184

Query: 195 LQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKE 91
           +                 +   A Y KLLA+  KE
Sbjct: 185 IARKKYLLRQKRNQKIKMRDDAAAYHKLLAKYSKE 219


>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +1

Query: 52  APAFDLFLATHLGFLLSLCKQFSIFSLRGLALSETLLLQSETMTSTL 192
           AP F ++    +G L+++C Q SIFS+  L + +  +L ++     L
Sbjct: 69  APFFGIWFELIIGKLITMCYQLSIFSIGNLEIRKFYVLWTDDSNKML 115


>U41995-2|AAA83460.1|  317|Caenorhabditis elegans Serpentine
           receptor, class x protein46 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +1

Query: 235 MSGFSVFFSFLSWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNF-LGT 411
           +S F+  F +++W  AF D       F  V  +  F        + YIS+S    + +  
Sbjct: 33  VSSFNKSFGYITWNQAFGDALQSTTVFTLVVPMVFFDLEVLKANSNYISLSMLLGYDISV 92

Query: 412 LAH 420
           L+H
Sbjct: 93  LSH 95


>AF099919-13|AAC68798.1|  636|Caenorhabditis elegans Hypothetical
           protein F40G9.1 protein.
          Length = 636

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -1

Query: 729 GCQKLFEVVDEHK---LRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 583
           G  ++FE+  E K    RIF EK +   +   ++ ++     L++ G NDK+
Sbjct: 10  GLNRIFEIAKEKKNGKFRIFLEKNVKNVIFLQEIFEKSLFLCLKINGSNDKK 61


>AF078787-7|AAC26954.2|  518|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 2
           protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 726 CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 583
           C K F+   + ++    E+++  E E  Q  D W G  LR  G  DK+
Sbjct: 272 CVKFFKNYMQEEVVQNIERKLQFEREEQQELDSWTGKSLRAEGVEDKE 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,434,980
Number of Sequences: 27780
Number of extensions: 339015
Number of successful extensions: 927
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)