Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13d10
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0238 - 1576211-1576759,1577315-1577664,1578684-1578816 33 0.31
01_06_0359 + 28722524-28722613,28722794-28722863,28723062-287231... 33 0.31
03_02_0147 - 5923117-5923215,5923882-5924069,5924885-5924977,592... 32 0.53
03_05_0813 - 27894593-27894915,27896164-27896422,27896513-278967... 31 0.70
04_04_1553 - 34363848-34366058,34369087-34370451 31 1.2
03_02_0458 + 8643804-8643904,8643994-8644091,8644206-8644504,864... 29 2.8
02_02_0146 - 7171656-7172044,7172383-7175008 29 2.8
12_01_0546 + 4329200-4329472 29 5.0
11_01_0547 + 4314858-4315033,4315898-4316075,4317240-4317419 28 6.6
02_05_0555 - 29937973-29938395,29938509-29938790 28 6.6
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883... 28 8.7
04_03_0817 + 20003128-20003189,20003270-20003693,20003788-20004345 28 8.7
>02_01_0238 - 1576211-1576759,1577315-1577664,1578684-1578816
Length = 343
Score = 32.7 bits (71), Expect = 0.31
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 139 ACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVXRGPI 26
AC CR A AV + C H CLC DC++ P+
Sbjct: 295 ACRLCRMKEA---AVLVMPCRHLCLCADCEKNADVCPV 329
>01_06_0359 +
28722524-28722613,28722794-28722863,28723062-28723159,
28724029-28724167,28724243-28724370,28724500-28724592,
28724707-28724757,28725405-28725470,28725568-28725633,
28725900-28725977,28726248-28726427,28726502-28726577,
28726660-28726823,28727569-28727931
Length = 553
Score = 32.7 bits (71), Expect = 0.31
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -1
Query: 140 CMHALQKKFRSLPRRYLSALRTFVFVHRLRRNG 42
C+HAL ++ R ++ AL+T V +HRL R+G
Sbjct: 71 CIHALARRLAKT-RNWIVALKTLVVIHRLLRDG 102
>03_02_0147 -
5923117-5923215,5923882-5924069,5924885-5924977,
5925499-5925628,5925720-5925802,5925893-5925976,
5926253-5926316,5926375-5926515,5926801-5926863,
5926968-5927006,5927126-5927185,5927567-5927624,
5927708-5928099
Length = 497
Score = 31.9 bits (69), Expect = 0.53
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 291 TVESYSGGSERAKTRSACVLTRPSCMLLSAAVGVNWNR 404
TVE ++G S A +R+A + PS L S G W R
Sbjct: 101 TVEEWAGSSAAALSRTAVLTASPSSSLASRRFGSRWGR 138
>03_05_0813 -
27894593-27894915,27896164-27896422,27896513-27896728,
27896920-27897625,27897895-27898100
Length = 569
Score = 31.5 bits (68), Expect = 0.70
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = -3
Query: 495 CVLPTTYGHC*KRYCAVRTLFVETKNYQRNFD---SNLPQPPRSTTCTTVALRRKRFEFW 325
C LP +G R C+ + +R+F+ P+P R +AL +RF+FW
Sbjct: 299 CNLPLQHGD---RLCSDDVTLISLLFRKRHFELRHQQQPEPKRLCNDAYIALCHRRFKFW 355
Query: 324 LARYLRC 304
L L C
Sbjct: 356 LHHDLVC 362
>04_04_1553 - 34363848-34366058,34369087-34370451
Length = 1191
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 139 ACMRCRRSFAVYPAVTYLHCGHSCLCTDCD 50
+C RC R V+ V ++H GHS +C D
Sbjct: 473 SCCRCIRFLHVFVFVLHIHGGHSQMCDPAD 502
>03_02_0458 +
8643804-8643904,8643994-8644091,8644206-8644504,
8645930-8646460
Length = 342
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 184 NLPLNTECNVKAVD-SACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVXRGPI 26
NL L + N + D +AC C+ S A + L C H CLC +C+ + P+
Sbjct: 279 NLQLMPKENRHSKDLTACRVCKSSEA---CMLLLPCRHLCLCKECESKLSFCPL 329
>02_02_0146 - 7171656-7172044,7172383-7175008
Length = 1004
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = -2
Query: 490 FTNNVWPLLKTVLCCAYVVRRN*KLPTEFRFQFTPTAALNNMHDGRVKTQAL 335
F N+W K + Y LP+E F T NNM G + + A+
Sbjct: 423 FPENIWSFAKLINIMIYNNNFTGNLPSEISFNITRIEIGNNMFSGALPSAAI 474
>12_01_0546 + 4329200-4329472
Length = 90
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -2
Query: 391 TPTAA--LNNMHDGRVKTQALRVLARSLPPLYDSTVDRHGCKVFTVRRYNRRVIDFAGIR 218
TPT +N H+ R ++ + R PL + D HG TVRR + D AG R
Sbjct: 8 TPTMGQRINTQHN-RHRSHNIEAYIRQDTPLDINFRDTHGVSSDTVRRDESAISDLAGHR 66
Query: 217 NK 212
K
Sbjct: 67 FK 68
>11_01_0547 + 4314858-4315033,4315898-4316075,4317240-4317419
Length = 177
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 403 EIPLVIFSFDEQRTHSTIPFLTMAIRC 483
+IP I+SF +R HST P + RC
Sbjct: 69 QIPFPIYSFVTRREHSTYPRTSRRTRC 95
>02_05_0555 - 29937973-29938395,29938509-29938790
Length = 234
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -3
Query: 390 PQPPRSTTCTTVALR---RKRFEFWLARYLRCTTRPS 289
PQP RST VA R R+ ++FWL C PS
Sbjct: 11 PQPKRSTAAAAVARRRIGRELWQFWLDPPPYCRPGPS 47
>06_03_1457 -
30287185-30287287,30287691-30287759,30288212-30288351,
30288447-30288641,30288743-30289363,30289688-30290257,
30290332-30293638,30293764-30293863,30293978-30295014,
30295256-30295604,30296299-30296374,30296456-30297022,
30297094-30297238,30298281-30298405,30298491-30298582,
30298646-30298828,30298946-30299058,30299499-30299649,
30299720-30299882
Length = 2701
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 444 AQHNTVFNNGHTLLVKRSGRRRHVTKRFFKQVHQLVANIASSVSGVHGDLPA 599
++H +F+ +LL R ++FF V V ++ V+ +HGD P+
Sbjct: 106 SRHEIIFDTVWSLLSLLRTGDREAYRQFFLDVMVAVQDVLYVVASMHGDRPS 157
>04_03_0817 + 20003128-20003189,20003270-20003693,20003788-20004345
Length = 347
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -2
Query: 139 ACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVXRGPI 26
A C+ A ++ L C H CLC C+ V P+
Sbjct: 296 AAALCKACGAGEASMLLLPCRHLCLCRGCEAAVDACPV 333
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,672,686
Number of Sequences: 37544
Number of extensions: 374602
Number of successful extensions: 1119
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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