Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13d10
         (725 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113263-1|AAM29268.1|  338|Drosophila melanogaster AT15655p pro...    29   6.4  
AE014296-732|AAF47822.1|  338|Drosophila melanogaster CG1134-PA ...    29   6.4  
AE013599-2405|AAM68492.2|  396|Drosophila melanogaster CG30459-P...    29   6.4  
AY069072-1|AAL39217.1|  319|Drosophila melanogaster GH09066p pro...    29   8.5  
AY058770-1|AAL13999.1|  699|Drosophila melanogaster SD05126p pro...    29   8.5  
AE014297-2064|AAF55213.2|  636|Drosophila melanogaster CG33207-P...    29   8.5  
AE013599-1613|AAF58440.1|  700|Drosophila melanogaster CG17019-P...    29   8.5  
AB081475-1|BAC06341.1|  636|Drosophila melanogaster transmembran...    29   8.5  

>AY113263-1|AAM29268.1|  338|Drosophila melanogaster AT15655p
           protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 97  VTYLHCGHSCLCTDCDETV 41
           +  L CGH CLC DC + +
Sbjct: 300 IILLPCGHVCLCEDCAQKI 318


>AE014296-732|AAF47822.1|  338|Drosophila melanogaster CG1134-PA
           protein.
          Length = 338

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 97  VTYLHCGHSCLCTDCDETV 41
           +  L CGH CLC DC + +
Sbjct: 300 IILLPCGHVCLCEDCAQKI 318


>AE013599-2405|AAM68492.2|  396|Drosophila melanogaster CG30459-PA
           protein.
          Length = 396

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = -3

Query: 471 HC*KRYCAVRTLFVETKNYQRNFDSNLPQP--PRSTTCTTVALRRKRFEFWLARYLRCTT 298
           HC  + C    L        RN DS + +P  P+   C     ++++ E W     +C  
Sbjct: 301 HCKDKNCPKAPLI--PPGCDRNRDSFIYEPRLPKKPPCECAKCKQRQAENWKDNKRKCPR 358

Query: 297 RPSIGTAARCSRCG 256
            PS  + A+C RCG
Sbjct: 359 IPS--SEAKC-RCG 369


>AY069072-1|AAL39217.1|  319|Drosophila melanogaster GH09066p
           protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
 Frame = -2

Query: 238 IDFAGIRNKTLEIIKTDRNLPLNTECNVK---AVDSACMRCRRSFAVYPAVTYLHCGHSC 68
           +D+ G   K   + +  R      EC      A D  C  C    A    V +L CGH  
Sbjct: 235 VDYKGCCEKQELLDRVSRLWKTMRECPAVEKLATDELCKICMD--APIECV-FLECGHMA 291

Query: 67  LCTDCDETVXRGPI 26
            CT C + +   PI
Sbjct: 292 TCTSCGKVLNECPI 305


>AY058770-1|AAL13999.1|  699|Drosophila melanogaster SD05126p
           protein.
          Length = 699

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
 Frame = -2

Query: 238 IDFAGIRNKTLEIIKTDRNLPLNTECNVK---AVDSACMRCRRSFAVYPAVTYLHCGHSC 68
           +D+ G   K   + +  R      EC      A D  C  C    A    V +L CGH  
Sbjct: 615 VDYKGCCEKQELLDRVSRLWKTMRECPAVEKLATDELCKICMD--APIECV-FLECGHMA 671

Query: 67  LCTDCDETVXRGPI 26
            CT C + +   PI
Sbjct: 672 TCTSCGKVLNECPI 685


>AE014297-2064|AAF55213.2|  636|Drosophila melanogaster CG33207-PB,
           isoform B protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 345 VLTRPSCMLLSAAVGVNWNRNS 410
           VLT+P    LS+A+  +WNRNS
Sbjct: 565 VLTQPKPSKLSSALNFSWNRNS 586


>AE013599-1613|AAF58440.1|  700|Drosophila melanogaster CG17019-PA
           protein.
          Length = 700

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
 Frame = -2

Query: 238 IDFAGIRNKTLEIIKTDRNLPLNTECNVK---AVDSACMRCRRSFAVYPAVTYLHCGHSC 68
           +D+ G   K   + +  R      EC      A D  C  C    A    V +L CGH  
Sbjct: 616 VDYKGCCEKQELLDRVSRLWKTMRECPAVEKLATDELCKICMD--APIECV-FLECGHMA 672

Query: 67  LCTDCDETVXRGPI 26
            CT C + +   PI
Sbjct: 673 TCTSCGKVLNECPI 686


>AB081475-1|BAC06341.1|  636|Drosophila melanogaster transmembrane
           protein Pxb protein.
          Length = 636

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 345 VLTRPSCMLLSAAVGVNWNRNS 410
           VLT+P    LS+A+  +WNRNS
Sbjct: 565 VLTQPKPSKLSSALNFSWNRNS 586


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,102,902
Number of Sequences: 53049
Number of extensions: 646631
Number of successful extensions: 2031
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2031
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3252477558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)