Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13d10
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.73 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    24   1.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 387  QPPRSTTCTTVALRRKRFEFWLA 319
            QPP  TTCTT+  +  R   W++
Sbjct: 1083 QPPHDTTCTTLTSQTIRIS-WMS 1104


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 666 FVNTVFEETXINYEDIKKFFN 604
           F+ + +EE  I YE I+  FN
Sbjct: 284 FMKSQYEENNIEYEGIQDIFN 304


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/47 (19%), Positives = 22/47 (46%)
 Frame = +2

Query: 149 SLHIAFCVERQVSVGLNDFQRFVANARKVNYTSVVAPHREHLAAVPI 289
           ++ +  C    +++      R++A  R V+Y  +++P R  L    +
Sbjct: 143 AVDVWMCTASILNLCAISLDRYLAVTRPVSYPQIMSPRRARLLVATV 189


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 73  SCLCTDCDE 47
           SC C DCDE
Sbjct: 325 SCSCLDCDE 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,135
Number of Sequences: 438
Number of extensions: 3865
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)