Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13d08
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 252 3e-68
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 126 4e-30
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 112 5e-26
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 105 6e-24
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 8e-21
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 77 3e-15
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 73 4e-14
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 70 3e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 1e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.3
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 5.4
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 5.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 9.5
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 25 9.5
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 9.5
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 9.5
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 252 bits (617), Expect = 3e-68
Identities = 116/131 (88%), Positives = 122/131 (93%)
Frame = -3
Query: 650 GQVITIGNERFRCPEALFQPSFLGMEAXGIHETTYNSIMKCDVDIRKDLYANTVLSGGTT 471
GQVITIGNERFR PEALFQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+SGGTT
Sbjct: 245 GQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTT 304
Query: 470 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 291
MYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISKQEYDE
Sbjct: 305 MYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 364
Query: 290 SGPSIVHRKCF 258
SGP IV+RKCF
Sbjct: 365 SGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 126 bits (303), Expect = 4e-30
Identities = 57/130 (43%), Positives = 87/130 (66%)
Frame = -3
Query: 647 QVITIGNERFRCPEALFQPSFLGMEAXGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 468
Q IT+G E F PE LF P +G EA G+H + SI+ D+D+R LY+N VLSGG+T+
Sbjct: 251 QTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTL 310
Query: 467 YPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 288
G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+ +EY ++
Sbjct: 311 LRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KN 369
Query: 287 GPSIVHRKCF 258
+++ R+ F
Sbjct: 370 DQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 112 bits (269), Expect = 5e-26
Identities = 58/134 (43%), Positives = 86/134 (64%), Gaps = 12/134 (8%)
Frame = -3
Query: 650 GQVITIGNERFRCPEALFQPSFLGMEAXGIHETTYNSIMKCDVDIRKDLYANTVLSGGTT 471
G+VI +G+ER+ CPE LFQP +G E G+ E +++I DVDIRK LY VLSGG++
Sbjct: 245 GRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSS 304
Query: 470 MYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS-LSTF 327
MY G+ R++KEI L P+ + K+KI P R+++V+IGG++LA ++
Sbjct: 305 MYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQN 364
Query: 326 QQMWISKQEYDESG 285
MW+SK E++E G
Sbjct: 365 DHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 105 bits (252), Expect = 6e-24
Identities = 55/127 (43%), Positives = 74/127 (58%), Gaps = 11/127 (8%)
Frame = -3
Query: 632 GNERFRCPEALFQPSFLGMEAX---------GIHETTYNSIMKCDVDIRKDLYANTVLSG 480
G ERFR E LF PSF + G+HE Y SI+ CD ++R L N V++G
Sbjct: 292 GQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTG 351
Query: 479 GTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYSVWIGGSILASLSTFQQMWISK 306
GT++ PG+++R+Q E+ LA S + + +VW GGSILASL FQ +W+SK
Sbjct: 352 GTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSK 411
Query: 305 QEYDESG 285
QEYDE G
Sbjct: 412 QEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.1 bits (226), Expect = 8e-21
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -3
Query: 566 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 387
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 386 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 261
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 76.6 bits (180), Expect = 3e-15
Identities = 42/128 (32%), Positives = 64/128 (50%)
Frame = -3
Query: 647 QVITIGNERFRCPEALFQPSFLGMEAXGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 468
QV+ + NERF PE LF PS + + GI E S+ +I+ L N V GG
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331
Query: 467 YPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 288
+PG R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E
Sbjct: 332 FPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEH 390
Query: 287 GPSIVHRK 264
G +I+ RK
Sbjct: 391 GANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 72.9 bits (171), Expect = 4e-14
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Frame = -3
Query: 641 ITIGNERFRCPEALFQPSFLGME-AXGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 465
I +G ERF PE F P + + E N + +D+RK LY N VLSGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
Query: 464 PGIADRMQKEITALAPST--------------MKIKIIAPPERKYSVWIGGSILASLSTF 327
+R+Q+++ + + + +I+ ++ +VW GGS+LA F
Sbjct: 340 KNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399
Query: 326 QQMWISKQEYDESGPSIVHR 267
+K +Y+E G SI R
Sbjct: 400 GSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 69.7 bits (163), Expect = 3e-13
Identities = 31/118 (26%), Positives = 62/118 (52%)
Frame = -3
Query: 626 ERFRCPEALFQPSFLGMEAXGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 447
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 446 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 273
+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -3
Query: 512 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 342
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 341 SLSTFQQMWISKQEYDESGPSIVHRK 264
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -3
Query: 365 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 264
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.8 bits (54), Expect = 5.4
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = -3
Query: 644 VITIGNERFRCPEALFQPSFLG-MEAXGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 468
++T+ NE + E L S + E+ + CD+D ++ + + T +
Sbjct: 136 LVTLPNENNQVIEPLSSQSCKSQLSTQNYSESDFGWNQLCDLD---PIFKSLAFTDDTNL 192
Query: 467 YPGIADRMQKEITALAPSTMKIKIIAPPERKYS 369
+P AD I ++K A RKYS
Sbjct: 193 FPAFADSEAALIMLKKREMTRVKHRAGRPRKYS 225
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 440 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 330
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 373 TPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPP 278
TP + PPS+PS++ R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 612 PRGSLPTLVLGYGSLXHP 559
P G++PTL+LG G + HP
Sbjct: 568 PLGNVPTLILG-GDVYHP 584
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -1
Query: 367 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 281
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 306 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 392
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -1
Query: 367 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 281
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,194
Number of Sequences: 5004
Number of extensions: 48672
Number of successful extensions: 157
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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