Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13d08
         (652 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.         278   1e-76
U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.         278   1e-76
U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.         278   1e-76
CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.          258   1e-70
DQ974162-1|ABJ52802.1|  418|Anopheles gambiae serpin 3 protein.        27   0.68 

>U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score =  278 bits (681), Expect = 1e-76
 Identities = 130/131 (99%), Positives = 130/131 (99%)
 Frame = -3

Query: 650 GQVITIGNERFRCPEALFQPSFLGMEAXGIHETTYNSIMKCDVDIRKDLYANTVLSGGTT 471
           GQVITIGNERFRCPEALFQPSFLGMEA GIHETTYNSIMKCDVDIRKDLYANTVLSGGTT
Sbjct: 246 GQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTT 305

Query: 470 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 291
           MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE
Sbjct: 306 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 365

Query: 290 SGPSIVHRKCF 258
           SGPSIVHRKCF
Sbjct: 366 SGPSIVHRKCF 376


>U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score =  278 bits (681), Expect = 1e-76
 Identities = 130/131 (99%), Positives = 130/131 (99%)
 Frame = -3

Query: 650 GQVITIGNERFRCPEALFQPSFLGMEAXGIHETTYNSIMKCDVDIRKDLYANTVLSGGTT 471
           GQVITIGNERFRCPEALFQPSFLGMEA GIHETTYNSIMKCDVDIRKDLYANTVLSGGTT
Sbjct: 246 GQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTT 305

Query: 470 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 291
           MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE
Sbjct: 306 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 365

Query: 290 SGPSIVHRKCF 258
           SGPSIVHRKCF
Sbjct: 366 SGPSIVHRKCF 376


>U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score =  278 bits (681), Expect = 1e-76
 Identities = 130/131 (99%), Positives = 130/131 (99%)
 Frame = -3

Query: 650 GQVITIGNERFRCPEALFQPSFLGMEAXGIHETTYNSIMKCDVDIRKDLYANTVLSGGTT 471
           GQVITIGNERFRCPEALFQPSFLGMEA GIHETTYNSIMKCDVDIRKDLYANTVLSGGTT
Sbjct: 246 GQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTT 305

Query: 470 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 291
           MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE
Sbjct: 306 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 365

Query: 290 SGPSIVHRKCF 258
           SGPSIVHRKCF
Sbjct: 366 SGPSIVHRKCF 376


>CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.
          Length = 376

 Score =  258 bits (631), Expect = 1e-70
 Identities = 119/131 (90%), Positives = 124/131 (94%)
 Frame = -3

Query: 650 GQVITIGNERFRCPEALFQPSFLGMEAXGIHETTYNSIMKCDVDIRKDLYANTVLSGGTT 471
           GQVITIGNERFR PEALFQPSFLGME+ GIHET YNSIM+CDVDIRKDLYAN+VLSGGTT
Sbjct: 246 GQVITIGNERFRAPEALFQPSFLGMESTGIHETVYNSIMRCDVDIRKDLYANSVLSGGTT 305

Query: 470 MYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 291
           MYPGIADRMQKEIT+LAPST+KIKIIAPPERKYSVWIGGSILASLSTFQ MWISK EYDE
Sbjct: 306 MYPGIADRMQKEITSLAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQTMWISKHEYDE 365

Query: 290 SGPSIVHRKCF 258
            GP IVHRKCF
Sbjct: 366 GGPGIVHRKCF 376


>DQ974162-1|ABJ52802.1|  418|Anopheles gambiae serpin 3 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 0.68
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 301 STTSLAPPLYTGSASKRTARRCLQQPAAGCSIQA 200
           S  +L   LY GSAS+    R LQQ  +G + QA
Sbjct: 70  SVKALLALLYEGSASRSETERELQQALSGGNSQA 103


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,961
Number of Sequences: 2352
Number of extensions: 13217
Number of successful extensions: 37
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)