Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13d07
(378 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q0GYC3 Cluster: Putative uncharacterized protein; n=2; ... 117 6e-26
UniRef50_P41658 Cluster: Late expression factor 5; n=13; Nucleop... 73 1e-12
UniRef50_Q77K58 Cluster: Lef5; n=4; Nucleopolyhedrovirus|Rep: Le... 52 3e-06
UniRef50_Q0IL15 Cluster: Lef-5; n=5; Nucleopolyhedrovirus|Rep: L... 52 4e-06
UniRef50_O10344 Cluster: Late expression factor 5; n=8; Nucleopo... 47 1e-04
UniRef50_P41727 Cluster: Late expression factor 5 homolog; n=10;... 42 0.003
UniRef50_P24649 Cluster: DNA-binding protein; n=6; Nucleopolyhed... 41 0.009
UniRef50_UPI0000F1D641 Cluster: PREDICTED: similar to tenascin-R... 35 0.44
UniRef50_UPI000050FD95 Cluster: COG0491: Zn-dependent hydrolases... 34 0.76
UniRef50_UPI00004982CE Cluster: Rab GTPase activating protein; n... 33 1.8
UniRef50_Q38X97 Cluster: DNA primase G; n=1; Lactobacillus sakei... 33 1.8
UniRef50_Q73T79 Cluster: Putative uncharacterized protein; n=2; ... 32 3.1
UniRef50_A5TTL1 Cluster: Recombination protein J; n=4; Fusobacte... 32 4.1
UniRef50_A5FRF5 Cluster: Putative uncharacterized protein; n=3; ... 32 4.1
UniRef50_P84180 Cluster: Putative gustatory receptor 22b; n=3; D... 32 4.1
UniRef50_Q8IQA0 Cluster: CG32371-PA; n=2; Drosophila melanogaste... 31 5.4
UniRef50_A7IDZ7 Cluster: Putative uncharacterized protein; n=1; ... 31 7.1
UniRef50_Q4E351 Cluster: Putative uncharacterized protein; n=3; ... 31 7.1
UniRef50_Q2J800 Cluster: Alpha/beta hydrolase fold precursor; n=... 31 9.4
UniRef50_A6VVU8 Cluster: Extracellular solute-binding protein fa... 31 9.4
UniRef50_A5F9P2 Cluster: Putative uncharacterized protein; n=1; ... 31 9.4
UniRef50_Q00XH3 Cluster: MYBY1 protein; n=2; Ostreococcus|Rep: M... 31 9.4
UniRef50_Q9VW35 Cluster: CG8743-PA; n=6; Endopterygota|Rep: CG87... 31 9.4
>UniRef50_Q0GYC3 Cluster: Putative uncharacterized protein; n=2;
Nucleopolyhedrovirus|Rep: Putative uncharacterized
protein - Plutella xylostella multiple
nucleopolyhedrovirus
Length = 74
Score = 117 bits (282), Expect = 6e-26
Identities = 51/66 (77%), Positives = 53/66 (80%)
Frame = +1
Query: 178 MNGSWIFCMCEVYPGGVCNPSFCVCV*YRLKNGAGVSNHMWHRLKNDDGDDKPCLNCVIY 357
MNGSWIFCMC VYPGGVCNPSFC CV SNHMW+RLKN DGDDKPCLNCVIY
Sbjct: 1 MNGSWIFCMCGVYPGGVCNPSFCACV----------SNHMWYRLKNGDGDDKPCLNCVIY 50
Query: 358 VAVVFT 375
VAV+FT
Sbjct: 51 VAVIFT 56
>UniRef50_P41658 Cluster: Late expression factor 5; n=13;
Nucleopolyhedrovirus|Rep: Late expression factor 5 -
Autographa californica nuclear polyhedrosis virus
(AcMNPV)
Length = 265
Score = 73.3 bits (172), Expect = 1e-12
Identities = 32/41 (78%), Positives = 35/41 (85%)
Frame = +3
Query: 18 LAGLV*NLAEHDFVTVESQTRAGDEIASFLRYCRMCGMSGC 140
L+GL HDFVTVESQTRAGDEIASF+RYCR+CGMSGC
Sbjct: 225 LSGLSLKSCRHDFVTVESQTRAGDEIASFIRYCRLCGMSGC 265
Score = 35.1 bits (77), Expect = 0.44
Identities = 16/18 (88%), Positives = 16/18 (88%)
Frame = +2
Query: 2 NKLFELSGLSLKSCRTRF 55
NKLFELSGLSLKSCR F
Sbjct: 220 NKLFELSGLSLKSCRHDF 237
>UniRef50_Q77K58 Cluster: Lef5; n=4; Nucleopolyhedrovirus|Rep: Lef5
- Helicoverpa armigera NPV
Length = 315
Score = 52.4 bits (120), Expect = 3e-06
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = +3
Query: 15 SLAGLV*NLAEHDFVTVESQTRAGDEIASFLRYCRMC 125
S+ G+ +H FVTVE QTRAGDEI SF++YC++C
Sbjct: 270 SINGMSLRACQHSFVTVEKQTRAGDEIVSFIKYCQIC 306
>UniRef50_Q0IL15 Cluster: Lef-5; n=5; Nucleopolyhedrovirus|Rep:
Lef-5 - Leucania separata nuclear polyhedrosis virus
(LsNPV)
Length = 302
Score = 52.0 bits (119), Expect = 4e-06
Identities = 20/38 (52%), Positives = 29/38 (76%)
Frame = +3
Query: 18 LAGLV*NLAEHDFVTVESQTRAGDEIASFLRYCRMCGM 131
++G+ NL +H+FV VE Q RAGDE SF+R+C+ CG+
Sbjct: 259 MSGMSLNLCKHEFVVVERQLRAGDEAVSFIRHCKRCGL 296
>UniRef50_O10344 Cluster: Late expression factor 5; n=8;
Nucleopolyhedrovirus|Rep: Late expression factor 5 -
Orgyia pseudotsugata multicapsid polyhedrosis virus
(OpMNPV)
Length = 263
Score = 46.8 bits (106), Expect = 1e-04
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = +3
Query: 48 HDFVTVESQTRAGDEIASFLRYCRMCGM 131
H + TVE QTRAGDE+ SF+RYC +C M
Sbjct: 234 HRYATVERQTRAGDEMVSFIRYCELCQM 261
>UniRef50_P41727 Cluster: Late expression factor 5 homolog; n=10;
Granulovirus|Rep: Late expression factor 5 homolog -
Cryptophlebia leucotreta granulosis virus (ClGV)
(Cryptophlebialeucotreta granulovirus)
Length = 240
Score = 42.3 bits (95), Expect = 0.003
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +3
Query: 48 HDFVTVESQTRAGDEIASFLRYCRMCG 128
HD+V E Q RAGDE+ SF+++C+ CG
Sbjct: 212 HDYVIEEHQLRAGDEMVSFIKFCKKCG 238
>UniRef50_P24649 Cluster: DNA-binding protein; n=6;
Nucleopolyhedrovirus|Rep: DNA-binding protein - Bombyx
mori nuclear polyhedrosis virus (BmNPV)
Length = 65
Score = 40.7 bits (91), Expect = 0.009
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = -3
Query: 337 MVYRRRRRSSTGATYGLT 284
MVYRRRRRSSTGATYGLT
Sbjct: 1 MVYRRRRRSSTGATYGLT 18
>UniRef50_UPI0000F1D641 Cluster: PREDICTED: similar to tenascin-R;
n=1; Danio rerio|Rep: PREDICTED: similar to tenascin-R -
Danio rerio
Length = 618
Score = 35.1 bits (77), Expect = 0.44
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = +1
Query: 139 VNSSVFCNFGGLSMNGSWIFCMCEVYPGGVCNPSFCVC 252
VN S C G L + S IFC GVC FCVC
Sbjct: 272 VNGSCQCRSGFLGEDCSLIFCANNCSQRGVCKEGFCVC 309
>UniRef50_UPI000050FD95 Cluster: COG0491: Zn-dependent hydrolases,
including glyoxylases; n=1; Brevibacterium linens
BL2|Rep: COG0491: Zn-dependent hydrolases, including
glyoxylases - Brevibacterium linens BL2
Length = 255
Score = 34.3 bits (75), Expect = 0.76
Identities = 23/74 (31%), Positives = 33/74 (44%)
Frame = -1
Query: 324 AVVVLQPVPHMV*HAGAVLQPVSHADAEARVTDAARVDLAHTEDPGAVH*QAAEVTEHAT 145
+ VV+ P P M H A L V+ D A V D H+E G++ A EV +A
Sbjct: 28 SAVVIDPGPEMADHCQAFLAEVADRDLTAIVLTHQHAD--HSEMLGSIEQWAPEVPVYAV 85
Query: 144 INSQTFHTSDSSEG 103
+ HT ++G
Sbjct: 86 LERFARHTEPVADG 99
>UniRef50_UPI00004982CE Cluster: Rab GTPase activating protein; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: Rab GTPase
activating protein - Entamoeba histolytica HM-1:IMSS
Length = 348
Score = 33.1 bits (72), Expect = 1.8
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = -2
Query: 185 PFIDKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKIVFCKIL 33
P + + K+ N LL HS + + + V CP F+ Y + FC+IL
Sbjct: 214 PGLIRCEKIHNMLLKNIHHSIYNHLISLGYEEVQCPGFLFEWYMVWFCRIL 264
>UniRef50_Q38X97 Cluster: DNA primase G; n=1; Lactobacillus sakei
subsp. sakei 23K|Rep: DNA primase G - Lactobacillus
sakei subsp. sakei (strain 23K)
Length = 627
Score = 33.1 bits (72), Expect = 1.8
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = -1
Query: 270 LQPVSHADAEARVTDAARVDLAHTEDPGAVH*QAAEVTEHATINSQ 133
L+ +S +A +V D A V LA + P AVH +++EVT+ + Q
Sbjct: 77 LEQISFPEALTKVADFAGVTLADSYKPTAVHRESSEVTQFKQLYQQ 122
>UniRef50_Q73T79 Cluster: Putative uncharacterized protein; n=2;
Mycobacterium avium|Rep: Putative uncharacterized
protein - Mycobacterium paratuberculosis
Length = 201
Score = 32.3 bits (70), Expect = 3.1
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = -1
Query: 246 AEARVTDAARV--DLAHTEDPGAVH*QAAEVTEH-ATINSQTFHTSDSSEG 103
A TD AR+ D TEDPGA AA+VT H A + + +D S+G
Sbjct: 37 AATLTTDEARLLDDAGFTEDPGAYAEIAADVTAHMARLYGTAYSAADVSKG 87
>UniRef50_A5TTL1 Cluster: Recombination protein J; n=4;
Fusobacterium nucleatum|Rep: Recombination protein J -
Fusobacterium nucleatum subsp. polymorphum ATCC 10953
Length = 844
Score = 31.9 bits (69), Expect = 4.1
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +1
Query: 34 KILQNTIL*QSKAKRGQATKSLRSFATVGCVECLAVNSSVFCNFGGLS 177
K + TI+ + K G AT S RS + VECL S + +GG S
Sbjct: 366 KYYKPTIIMEIKENEGIATASCRSIDGLNIVECLNSVSDILVKYGGHS 413
>UniRef50_A5FRF5 Cluster: Putative uncharacterized protein; n=3;
Dehalococcoides|Rep: Putative uncharacterized protein -
Dehalococcoides sp. BAV1
Length = 193
Score = 31.9 bits (69), Expect = 4.1
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = +1
Query: 94 SLRSFATVGCVECLAVNSSVFCNFGGLSMNGSWIFCMCEVYPGGVCNPSFCVCV*YRLKN 273
+L +F + VE +AV ++ C GL + + C Y +CN C CV YRLK+
Sbjct: 101 TLENFKPISRVEAMAVITT--CQQAGLMT--TLVHCKEHFY--SICNCCRCCCVPYRLKH 154
Query: 274 GAGV 285
G+
Sbjct: 155 QYGI 158
>UniRef50_P84180 Cluster: Putative gustatory receptor 22b; n=3;
Drosophila melanogaster|Rep: Putative gustatory receptor
22b - Drosophila melanogaster (Fruit fly)
Length = 386
Score = 31.9 bits (69), Expect = 4.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 98 FVPSLLSDVWNVWLLIVACSVTSAACQ*TA 187
F SLL ++W+ WL I AC +T A TA
Sbjct: 288 FPNSLLINIWDFWLCIAACDLTEKAGDETA 317
>UniRef50_Q8IQA0 Cluster: CG32371-PA; n=2; Drosophila
melanogaster|Rep: CG32371-PA - Drosophila melanogaster
(Fruit fly)
Length = 294
Score = 31.5 bits (68), Expect = 5.4
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -1
Query: 225 AARVDLAHTEDPGAVH*QAAEVTEHATINSQTFHTSDSSEGT-KRFRRLPSFGFRLLQNR 49
+A+ DLA TE VH + TE A+ ++ T SEG+ + R + R+ Q R
Sbjct: 199 SAQTDLAITEPENQVHESQTKTTEKASAQTEKATTEPDSEGSIEELRNYCKYVSRMKQER 258
Query: 48 VLQDFKLSPL 19
+F LS L
Sbjct: 259 ---NFYLSKL 265
>UniRef50_A7IDZ7 Cluster: Putative uncharacterized protein; n=1;
Xanthobacter autotrophicus Py2|Rep: Putative
uncharacterized protein - Xanthobacter sp. (strain Py2)
Length = 469
Score = 31.1 bits (67), Expect = 7.1
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -2
Query: 335 GLSSPSSFFNRCHIWFDTPAPFFSRYHT---QTQKLGLQTP 222
GL + SF +C+IWFD AP R + T +LG++ P
Sbjct: 389 GLVADWSFGGKCNIWFDYEAPDAPRLYKANYSTDELGVRDP 429
>UniRef50_Q4E351 Cluster: Putative uncharacterized protein; n=3;
Trypanosoma cruzi|Rep: Putative uncharacterized protein -
Trypanosoma cruzi
Length = 1710
Score = 31.1 bits (67), Expect = 7.1
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = -2
Query: 326 SPSSFFNRCHIWFDTPAPFFSRYHTQTQKLGLQTPPG*TSHIQKIQEPFIDKPPKLQNTL 147
+PSSF + IW TP R L + SHI ++ P I + + +
Sbjct: 1011 TPSSFSSPSSIWTSTPFSETLRVAMGVMALASNSQQALLSHISRVFAPMITREDVMARWM 1070
Query: 146 LLTARHSTHP 117
L R+ HP
Sbjct: 1071 LDKFRNLPHP 1080
>UniRef50_Q2J800 Cluster: Alpha/beta hydrolase fold precursor; n=1;
Frankia sp. CcI3|Rep: Alpha/beta hydrolase fold
precursor - Frankia sp. (strain CcI3)
Length = 316
Score = 30.7 bits (66), Expect = 9.4
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +1
Query: 85 ATKSLRSFATVGCVECLAVNSSVFCNFGGLSMNGSWIFCMCEVYPGGV 228
AT +L FAT+ + LA V +F G S G W EVYP V
Sbjct: 113 ATLTLAGFATL-LKDFLAKQGIVQADFIGSSWGGGWALYFAEVYPDEV 159
>UniRef50_A6VVU8 Cluster: Extracellular solute-binding protein
family 1 precursor; n=22; Bacteria|Rep: Extracellular
solute-binding protein family 1 precursor - Marinomonas
sp. MWYL1
Length = 427
Score = 30.7 bits (66), Expect = 9.4
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -2
Query: 365 TAT*ITQFKHGLSSPSSFFNRCHIWFDTPAPFFSRYHTQTQKLGLQTPP 219
++T I Q +GLS S + +IW D P F++ H T+ TPP
Sbjct: 26 SSTGIAQAANGLSIESWRSDDANIWSDVIIPAFNKSHPDTKVNFAPTPP 74
>UniRef50_A5F9P2 Cluster: Putative uncharacterized protein; n=1;
Clostridium kluyveri DSM 555|Rep: Putative
uncharacterized protein - Clostridium kluyveri DSM 555
Length = 51
Score = 30.7 bits (66), Expect = 9.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 113 LSDVWNVWLLIVACSVTSAACQ*TAPGSSVC 205
++D WN W AC++T AC+ P S +C
Sbjct: 8 VTDEWNGW----ACTITGGACEFLIPNSKLC 34
>UniRef50_Q00XH3 Cluster: MYBY1 protein; n=2; Ostreococcus|Rep:
MYBY1 protein - Ostreococcus tauri
Length = 432
Score = 30.7 bits (66), Expect = 9.4
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 17 LSGLSLKSCRTRFCNSRKPNEGRRRNRFVP 106
L G S KSCR R+CN PN +R F P
Sbjct: 80 LPGRSSKSCRLRWCNQLNPNV--KRGPFTP 107
>UniRef50_Q9VW35 Cluster: CG8743-PA; n=6; Endopterygota|Rep:
CG8743-PA - Drosophila melanogaster (Fruit fly)
Length = 652
Score = 30.7 bits (66), Expect = 9.4
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 100 RSFATVG-CVECLAVNSSVFCNFGGLSMNGSWIFCMCEVY 216
RS AT C+ L +F F LS +W++ C++Y
Sbjct: 510 RSLATTSECLFALINGDDMFATFATLSSKATWLWWFCQIY 549
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 345,467,238
Number of Sequences: 1657284
Number of extensions: 6543849
Number of successful extensions: 17977
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 17563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17974
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14444021678
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -