Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13d07
(378 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014134-301|AAX52653.1| 386|Drosophila melanogaster CG31931-PA... 32 0.28
AE014296-1323|AAN12020.1| 294|Drosophila melanogaster CG32371-P... 31 0.37
BT014672-1|AAT27296.1| 294|Drosophila melanogaster AT13084p pro... 31 0.65
AY070709-1|AAL48180.1| 652|Drosophila melanogaster SD02261p pro... 31 0.65
AE014296-3203|AAF49118.1| 652|Drosophila melanogaster CG8743-PA... 31 0.65
AY118666-1|AAM50035.1| 791|Drosophila melanogaster SD26855p pro... 27 8.0
AY060955-1|AAL28503.1| 809|Drosophila melanogaster GM08777p pro... 27 8.0
AY058625-1|AAL13854.1| 804|Drosophila melanogaster LD32196p pro... 27 8.0
AE014297-1958|AAF55144.1| 804|Drosophila melanogaster CG12241-P... 27 8.0
AE014296-3270|AAZ66056.1| 4705|Drosophila melanogaster CG7749-PB... 27 8.0
AE014296-3269|AAF49078.2| 4705|Drosophila melanogaster CG7749-PA... 27 8.0
AE013599-1448|AAM68666.1| 1740|Drosophila melanogaster CG8487-PA... 27 8.0
AE013599-1447|AAF58532.2| 1983|Drosophila melanogaster CG8487-PB... 27 8.0
>AE014134-301|AAX52653.1| 386|Drosophila melanogaster CG31931-PA
protein.
Length = 386
Score = 31.9 bits (69), Expect = 0.28
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 98 FVPSLLSDVWNVWLLIVACSVTSAACQ*TA 187
F SLL ++W+ WL I AC +T A TA
Sbjct: 288 FPNSLLINIWDFWLCIAACDLTEKAGDETA 317
>AE014296-1323|AAN12020.1| 294|Drosophila melanogaster CG32371-PA
protein.
Length = 294
Score = 31.5 bits (68), Expect = 0.37
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -1
Query: 225 AARVDLAHTEDPGAVH*QAAEVTEHATINSQTFHTSDSSEGT-KRFRRLPSFGFRLLQNR 49
+A+ DLA TE VH + TE A+ ++ T SEG+ + R + R+ Q R
Sbjct: 199 SAQTDLAITEPENQVHESQTKTTEKASAQTEKATTEPDSEGSIEELRNYCKYVSRMKQER 258
Query: 48 VLQDFKLSPL 19
+F LS L
Sbjct: 259 ---NFYLSKL 265
>BT014672-1|AAT27296.1| 294|Drosophila melanogaster AT13084p
protein.
Length = 294
Score = 30.7 bits (66), Expect = 0.65
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -1
Query: 225 AARVDLAHTEDPGAVH*QAAEVTEHATINSQTFHTSDSSEGT-KRFRRLPSFGFRLLQNR 49
+A+ D+A TE VH + TE A+ ++ T SEG+ + R + R+ Q R
Sbjct: 199 SAQTDMAITEPENQVHESQTKTTEKASAQTEKATTEPDSEGSIEELRNYCKYVSRMKQER 258
Query: 48 VLQDFKLSPL 19
+F LS L
Sbjct: 259 ---NFYLSKL 265
>AY070709-1|AAL48180.1| 652|Drosophila melanogaster SD02261p
protein.
Length = 652
Score = 30.7 bits (66), Expect = 0.65
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 100 RSFATVG-CVECLAVNSSVFCNFGGLSMNGSWIFCMCEVY 216
RS AT C+ L +F F LS +W++ C++Y
Sbjct: 510 RSLATTSECLFALINGDDMFATFATLSSKATWLWWFCQIY 549
>AE014296-3203|AAF49118.1| 652|Drosophila melanogaster CG8743-PA
protein.
Length = 652
Score = 30.7 bits (66), Expect = 0.65
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 100 RSFATVG-CVECLAVNSSVFCNFGGLSMNGSWIFCMCEVY 216
RS AT C+ L +F F LS +W++ C++Y
Sbjct: 510 RSLATTSECLFALINGDDMFATFATLSSKATWLWWFCQIY 549
>AY118666-1|AAM50035.1| 791|Drosophila melanogaster SD26855p
protein.
Length = 791
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = +1
Query: 157 CNFGGLSMNGSWI-FCMCEVYPGGVCNPSFCVCV*YRLKNGAGVSN 291
C GG+ G I CMC Y G C C NGA N
Sbjct: 568 CKNGGICEEGDGISHCMCRGYTGPTCEIDVDECENQPCGNGATCIN 613
>AY060955-1|AAL28503.1| 809|Drosophila melanogaster GM08777p
protein.
Length = 809
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = +1
Query: 157 CNFGGLSMNGSWI-FCMCEVYPGGVCNPSFCVCV*YRLKNGAGVSN 291
C GG+ G I CMC Y G C C NGA N
Sbjct: 319 CKNGGICEEGDGISHCMCRGYTGPTCEIDVDECENQPCGNGATCIN 364
>AY058625-1|AAL13854.1| 804|Drosophila melanogaster LD32196p
protein.
Length = 804
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -2
Query: 203 IQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAKERSDFVACPR 75
I K+ FI PKL + LTA +ST + AK+ +F+ R
Sbjct: 494 ILKVGRHFITIEPKLAGHIQLTANYSTE-SHAKDHENFINVAR 535
>AE014297-1958|AAF55144.1| 804|Drosophila melanogaster CG12241-PA
protein.
Length = 804
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -2
Query: 203 IQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAKERSDFVACPR 75
I K+ FI PKL + LTA +ST + AK+ +F+ R
Sbjct: 494 ILKVGRHFITIEPKLAGHIQLTANYSTE-SHAKDHENFINVAR 535
>AE014296-3270|AAZ66056.1| 4705|Drosophila melanogaster CG7749-PB,
isoform B protein.
Length = 4705
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = +1
Query: 157 CNFGGLSMNGSWI-FCMCEVYPGGVCNPSFCVCV*YRLKNGAGVSN 291
C GG+ G I CMC Y G C C NGA N
Sbjct: 4215 CKNGGICEEGDGISHCMCRGYTGPTCEIDVDECENQPCGNGATCIN 4260
>AE014296-3269|AAF49078.2| 4705|Drosophila melanogaster CG7749-PA,
isoform A protein.
Length = 4705
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = +1
Query: 157 CNFGGLSMNGSWI-FCMCEVYPGGVCNPSFCVCV*YRLKNGAGVSN 291
C GG+ G I CMC Y G C C NGA N
Sbjct: 4215 CKNGGICEEGDGISHCMCRGYTGPTCEIDVDECENQPCGNGATCIN 4260
>AE013599-1448|AAM68666.1| 1740|Drosophila melanogaster CG8487-PA,
isoform A protein.
Length = 1740
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 111 SEGTKRFRRLPSFGFRLLQNRVLQDFKLSPL 19
S+GT+RF + P G + LQ + + +L P+
Sbjct: 648 SQGTERFNQRPEKGIQYLQEHGILNAELDPM 678
>AE013599-1447|AAF58532.2| 1983|Drosophila melanogaster CG8487-PB,
isoform B protein.
Length = 1983
Score = 27.1 bits (57), Expect = 8.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 111 SEGTKRFRRLPSFGFRLLQNRVLQDFKLSPL 19
S+GT+RF + P G + LQ + + +L P+
Sbjct: 648 SQGTERFNQRPEKGIQYLQEHGILNAELDPM 678
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,019,434
Number of Sequences: 53049
Number of extensions: 326062
Number of successful extensions: 859
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1003372560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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