Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13d07
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of a...    30   0.63 
AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.      30   0.63 
U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p...    29   0.83 
Z82264-11|CAB05155.2|  262|Caenorhabditis elegans Hypothetical p...    29   1.1  
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ...    29   1.1  
U97002-1|AAY86260.1|  181|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U42436-9|AAF99893.1|  109|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical pr...    27   5.9  
U50069-5|AAY86213.1|  206|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z70267-1|CAA94211.1|  307|Caenorhabditis elegans Hypothetical pr...    26   7.8  
Z50109-5|CAA90438.1|  325|Caenorhabditis elegans Hypothetical pr...    26   7.8  
U55363-12|AAA97969.1|  320|Caenorhabditis elegans Hypothetical p...    26   7.8  
AF039053-16|AAC25869.1|  497|Caenorhabditis elegans Cytochrome p...    26   7.8  

>U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of
           activated let-60ras protein 5 protein.
          Length = 700

 Score = 29.9 bits (64), Expect = 0.63
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -2

Query: 209 SHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKIVFCKIL 33
           SH+QK+Q P   KPP+   T  L+ R+       K+ +D+    R   D Y I +  +L
Sbjct: 38  SHVQKLQ-PVYYKPPQNLETFELSLRNHFEEKTNKKFADYREFHRFTCDNYGIFWEDLL 95


>AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.
          Length = 700

 Score = 29.9 bits (64), Expect = 0.63
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -2

Query: 209 SHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKIVFCKIL 33
           SH+QK+Q P   KPP+   T  L+ R+       K+ +D+    R   D Y I +  +L
Sbjct: 38  SHVQKLQ-PVYYKPPQNLETFELSLRNHFEEKTNKKFADYREFHRFTCDNYGIFWEDLL 95


>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
           protein B0222.9 protein.
          Length = 1217

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 163 FGGLSMNGSWIFCMCEVYPGGVCNPSF 243
           FGG   N SWI CMC +    +  P++
Sbjct: 708 FGGKVNNASWIACMCAIVAKKLNRPTY 734


>Z82264-11|CAB05155.2|  262|Caenorhabditis elegans Hypothetical
           protein C49C3.5 protein.
          Length = 262

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 5   KLFELSGLSLKSCRTRFCNSRKPNEGR 85
           +L E++GL++K     FCN R+  +GR
Sbjct: 113 ELSEITGLTVKQINNWFCNQRRKADGR 139


>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
           protein F15E6.6 protein.
          Length = 1228

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 163 FGGLSMNGSWIFCMCEVYPGGVCNPSFCV 249
           FGG   N SWI C+C V    +  P++ V
Sbjct: 740 FGGKLNNASWIACICSVVAKKLNRPTYGV 768


>U97002-1|AAY86260.1|  181|Caenorhabditis elegans Hypothetical
           protein K09H11.9 protein.
          Length = 181

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 36  NLAEHDFVTVESQTRAGDEIASFLR 110
           NL  H FV  ESQ    +++ASFLR
Sbjct: 122 NLPIHKFVQPESQDYLAEQMASFLR 146


>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
           protein F46F11.9b protein.
          Length = 1282

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 128 STHPTVAKERSDFVACPRLAFDCYKI 51
           S H  +A  R    A P L+FDCY++
Sbjct: 516 SFHRVLAANRFSNAAIPALSFDCYRL 541


>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
           protein F46F11.9a protein.
          Length = 1280

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 128 STHPTVAKERSDFVACPRLAFDCYKI 51
           S H  +A  R    A P L+FDCY++
Sbjct: 514 SFHRVLAANRFSNAAIPALSFDCYRL 539


>U42436-9|AAF99893.1|  109|Caenorhabditis elegans Hypothetical
           protein C49H3.3 protein.
          Length = 109

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 213 DLAHTEDPGAVH*QAAEVTEHATINSQTFHTSDSS 109
           D   T+  G  + +  EVT  ATIN++T    D S
Sbjct: 43  DAEKTKTDGTANEEKMEVTSQATINTKTLKKKDGS 77


>Z81505-1|CAB04122.1|  673|Caenorhabditis elegans Hypothetical
           protein F16A11.1 protein.
          Length = 673

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 8   LFELSGLSLKSCRTRFCNSRKPNEG 82
           +F L+G  LK   T F ++R+P+EG
Sbjct: 474 VFYLNGTPLKEPETEFLSNRQPSEG 498


>Z54218-4|CAA90958.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
 Frame = -1

Query: 147 TINSQTFHTSDSSE------GTKRFRRLPSFGFRLLQNRVLQDFKLSPLSSNSL 4
           T+N+Q    S SSE       T+  R+L SF  R  +   +QD K+ PL+S S+
Sbjct: 604 TVNTQIICGSGSSETPQCPAATRTMRQL-SFSTRQDKPAAVQDLKVEPLNSYSV 656


>Z49910-9|CAA90125.1| 1367|Caenorhabditis elegans Hypothetical
           protein F44G4.8 protein.
          Length = 1367

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
 Frame = -1

Query: 147 TINSQTFHTSDSSE------GTKRFRRLPSFGFRLLQNRVLQDFKLSPLSSNSL 4
           T+N+Q    S SSE       T+  R+L SF  R  +   +QD K+ PL+S S+
Sbjct: 604 TVNTQIICGSGSSETPQCPAATRTMRQL-SFSTRQDKPAAVQDLKVEPLNSYSV 656


>U50069-5|AAY86213.1|  206|Caenorhabditis elegans Hypothetical
           protein C09B9.8 protein.
          Length = 206

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = +2

Query: 14  ELSGLSLKSCRTRFCNSRKPNEGRRRNRFVPSLLSDVWNVWLLIV 148
           E S +++ SCR   CN    N    R   +P LL+ +  +++ ++
Sbjct: 161 EESSINVCSCRGPLCNGSTINTSSTRTTILPILLATLIVIFMSLI 205


>Z70267-1|CAA94211.1|  307|Caenorhabditis elegans Hypothetical
           protein K04C1.1 protein.
          Length = 307

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 332 LSSPSSFFNRCHIWFDTPAPFFSRYHTQTQKL 237
           L + S FF R   W D   PF S   T TQ L
Sbjct: 234 LKNSSEFFERLVDWIDLLVPFASDALTLTQPL 265


>Z50109-5|CAA90438.1|  325|Caenorhabditis elegans Hypothetical
           protein C09H10.7 protein.
          Length = 325

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 17  LSGLSLKSCRTRFCNSRKPNEGRRRNRFVPSLLSDVWNVWLLIVACSVTS 166
           +  L   S  T F +S  PN   R   F P+L S   NV   +++  + S
Sbjct: 236 VEALRRPSDSTMFASSLAPNSAGRTTHFDPTLNSPAENVLSEVISSEIDS 285


>U55363-12|AAA97969.1|  320|Caenorhabditis elegans Hypothetical
           protein ZC404.11 protein.
          Length = 320

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
 Frame = +1

Query: 142 NSSVFCNFGGLSMNGSWIFCMCEVYPGGVCN---PS-----FCVCV*YRLKNGAGVSNHM 297
           + SVF +   LS+    +F    ++  G C    PS     F + +  R+K G   SN +
Sbjct: 154 DGSVFLDISPLSLANDCLFLKTSIFFSGSCFKILPSILMSMFSIIILIRIKAGKQRSNSL 213

Query: 298 WHRLKNDDGDDKPCLNCVIYVAVVF 372
            H   + D         +  V VVF
Sbjct: 214 SHNQTDQDAQIDRSTRFIQVVVVVF 238


>AF039053-16|AAC25869.1|  497|Caenorhabditis elegans Cytochrome p450
           family protein 33C1 protein.
          Length = 497

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 347 QFKHGLSSPSSFFNRCHIWFDTPAPFFSR 261
           + KH + SP+  F + HI+     P F++
Sbjct: 195 ELKHIIDSPAEIFGKLHIFLAMNIPIFAK 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,157,877
Number of Sequences: 27780
Number of extensions: 165670
Number of successful extensions: 474
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)