Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13d06
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    30   0.40 
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.53 
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    29   0.70 
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    28   1.2  
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|...    28   1.2  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    28   1.6  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    27   2.1  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   3.8  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    27   3.8  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    26   6.6  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    26   6.6  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.6  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   6.6  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    26   6.6  
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    25   8.7  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   8.7  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 16/69 (23%), Positives = 32/69 (46%)
 Frame = -3

Query: 381  AFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSRE 202
            AF H  F  ++ +  N +E      N   +   P+L T+    L   +D P ++++  + 
Sbjct: 1380 AFDHQSFKDIIVHVAN-LELYYRALN-FYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKS 1437

Query: 201  FDTEALVNF 175
             +T  ++NF
Sbjct: 1438 ENTPLILNF 1446


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
 Frame = +2

Query: 167 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTN--SILLV 340
           S S  +++SV +    I +  GLS ++ +  +  +  +G+P   +S VSVT N  ++   
Sbjct: 177 SSSSSSQSSVVSVNSEIFSYFGLSQQYVNYSTSRLCVVGTPRANMSTVSVTNNGSAVSNY 236

Query: 341 KLVTSGW---NLLCIKANVLN-------TTAAICRVSAL----FLNISNSGWVISRVLSI 478
            + T+GW   N  C+   V N       T A +  VS L      N + S  +  ++ S 
Sbjct: 237 TVNTNGWTSSNFKCVDDVVANIFGLDFYTAAVLSEVSILRSFALCNATTSSSLFRQIASY 296

Query: 479 AMY 487
            +Y
Sbjct: 297 GVY 299


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = -3

Query: 150 IAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVE 31
           IAK  G+SKRK+    + YE++K P    DL + S T+ E
Sbjct: 116 IAKFLGSSKRKSKELIEAYEASKTPP---DLKEESSTDEE 152


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +1

Query: 571 GFLDLFI-AVYNFGDRSNFVAFDTFHF-YTLIYNIC 672
           GF+ + I A+  F DRS  VAF +F +   L+Y IC
Sbjct: 120 GFIPVLIKAMKQFKDRSENVAFTSFRYALFLVYYIC 155


>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -3

Query: 438 IFRNKADTRQIAAVVFSTLAFIHNRFHPLV---TNFTNKMEFVVTETNDTS 295
           IFR   + R    V     AFI N++ PLV   T++TN     V +TN  S
Sbjct: 93  IFRFNLNHRGYLEVKSGFRAFIENKYSPLVFHATSWTNGFSIDVQKTNPIS 143


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -3

Query: 189 ALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSI 43
           +L NF++DNC ++   +   S R N   S+   S      D+DL  +++
Sbjct: 223 SLANFQSDNCKLKSHNSL-PSIRTNVRYSNSKPSTPLSPEDVDLGTYTV 270


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +2

Query: 458 ISRVLSIAMYLLSANLIFRVS*LSKLLRFFKSNSANS*VFWIFSSLFTISVTVRTLLHLT 637
           + R+LSIA +LLS + + R+    +    +  N+  S V   +    T SV V+  L + 
Sbjct: 14  LKRILSIAFFLLSLSTLLRIVNAQQ----YVDNNIGSMVLSDYDFAETPSVRVQRALEIL 69

Query: 638 RFIFIHLSTTF 670
           R+ +     T+
Sbjct: 70  RYYYEQEDVTY 80


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
 Frame = -3

Query: 594 SDEKIQKTYELAEFDLKNLSSLESYETL-----KIKLALSKYMAMLSTLEMTQPLLEIFR 430
           ++  I+  + L    L++L+ L+S   L      + L +++     S + +   +LEI  
Sbjct: 239 NENTIEDFFGLVRARLESLNLLDSDSELLCEFPDLSLKINEDNVYASQIHLVD-ILEILT 297

Query: 429 NKADTRQIAAVVFSTLAFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENE 259
              D  +  ++VFST      R++ LV   ++     + E  D       IL   N+
Sbjct: 298 VHCDLEESFSIVFSTQPRFIARYNELVQAVSSSSNSEIDEVEDAETIDSKILEKRND 354


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
 Frame = +2

Query: 167 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGS--PGMLVSLVSVTTNSILLV 340
           S S  + +S S+S  S+      S+ H+S+ S S +   S  P    S ++  ++S  + 
Sbjct: 192 SSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFIS 251

Query: 341 KL-VTSGWNLLCIKANVLNTTAAICRVSALFLNIS--NSGWVISRVLS-IAMYLLSANLI 508
            + VT   +     + V ++TAA+   ++   N +  N+G ++  V+  +A  ++ A  I
Sbjct: 252 TVTVTPSSSSSSTSSEVPSSTAALALNASKASNHTSLNAGAIVGIVIGCVAFAVVMALCI 311

Query: 509 F 511
           F
Sbjct: 312 F 312


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 289 GNACVISFSDHKLHFVSKISNK 354
           G+AC +S  + K+H ++ ISN+
Sbjct: 230 GSACAVSDDEGKIHVINDISNE 251


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = -3

Query: 207 REFDTEALVNFENDNCNVRIAK------TFGASKRKNTTRSDDYESNKQPDYDMDLSDFS 46
           R+  TE      + N  V++AK      +F   K+KNTT S   ES+     D    D S
Sbjct: 6   RKESTEVKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKK-KDSS 64

Query: 45  ITEVE 31
           + E E
Sbjct: 65  LNESE 69


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 286 SGNACVISFSDHKLHFVSKISNKW 357
           SGN   +S  D+K++   +  NKW
Sbjct: 266 SGNILAVSCGDNKVYLFKESQNKW 289


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 143  LAIRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTP 259
            L I+  QLSFS+    S + SRL  +T+   +     TP
Sbjct: 889  LIIKEEQLSFSRLQLLSRATSRLRTMTLSVFNNSGTLTP 927


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 325 LHFVSKISN-KWMESIVYKS*CAKHHGGNLPSVCFVSKYFQQRLGHFQGAEHSHVF 489
           L +++ +S+ KW+E +  K  C K+   N  S     K F + +G+   A +   +
Sbjct: 157 LQYITGVSDTKWLEFVSAKGQCPKYLYWNNKSYLLKKKRFLKEVGNSPSAVYCRYY 212


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 993

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = +2

Query: 308  VSVTTNSILLVKLVTSGWNLLCIKANVLNTTAAICRVSALFLN 436
            +S+ TNS L VKL ++   + C+ +  + ++ ++  ++ L L+
Sbjct: 905  ISMQTNSSLSVKLNSNSNTITCVVSGTMVSSPSLANITILGLS 947


>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 326 SILLVKLVTSGWNLLCIKANV 388
           S +L  L+  GW ++C  ANV
Sbjct: 19  SCILAWLIEEGWEVICYMANV 39


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
 Frame = -3

Query: 696 SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSD-EKIQKTYELAEFDLKNLSSLESY 520
           S+  H S A  +D  +K       ++    E+  ++   IQ++      DL     L   
Sbjct: 623 SILSHNSSAGNIDDKMKSIDESTRELEKNYEVYRNEMTAIQESLSKRNQDL-----LSEM 677

Query: 519 ETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAV 397
           E ++ +L  SKY   LST  +T    ++   K + +++ ++
Sbjct: 678 EAIRKELENSKYQQQLSTDRLTNANNDVEAFKKEAKELRSI 718


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,973,910
Number of Sequences: 5004
Number of extensions: 60713
Number of successful extensions: 215
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)