Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13d05
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   2.0  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   2.6  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   2.6  
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    25   4.5  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    25   6.0  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    24   7.9  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    24   7.9  
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy...    24   7.9  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -1

Query: 375 DIIIKSLA*NLSGPLSVCASMPVTDLVLLASK---VLRTDKMCHTCSSACVRVTTNPNGA 205
           D II +L  N  G +++C   P+T++ L  +K   V++  K     + A   V      A
Sbjct: 104 DFIIDTLRNNEPGTITICTIGPLTNIALALNKAPEVIQRAKQIVMMAGAFSEVGNITPAA 163

Query: 204 VYLLYVN 184
            + +YV+
Sbjct: 164 EFNIYVD 170


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 62  SGYENSRPININLRSITPSLNG 127
           +G +  + I+INL  +TPSLNG
Sbjct: 333 TGAKYDQIIDINLSELTPSLNG 354


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 267 DKMCHTCSSACVRVTTNPNGAVY 199
           DK  +T SSA    TTNP+G+ +
Sbjct: 119 DKSKNTASSATGAATTNPSGSTF 141


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -3

Query: 295 AFGFKGFAHRQNVPHLQLCLCARYHKSQRRSVLVVCK*ISIKARRAN 155
           A+ +   AH Q V H ++    + H S+  S  VV    S    RAN
Sbjct: 89  AYEYFSIAHSQGVHHAEVFFDPQTHTSRGISYDVVVSGFSAACERAN 135


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 288 ASKVLRTDKMCHTCSSAC 235
           + KV R DK+C TC   C
Sbjct: 183 SDKVPRVDKVCFTCGVNC 200


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +2

Query: 56   LVSGYENSRPININLRSITPSLNGTRG 136
            L+  YE S+PI I+L ++  S+N T+G
Sbjct: 985  LLENYE-SKPICIDLLALDLSVNSTKG 1010


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -1

Query: 309 VTDLVLLASKVLRTDKMCHTCSSACVRVTTNPNGAVYLLYVN 184
           V D++LL+  V    +      S  + +  NPN  VY+ + +
Sbjct: 155 VFDILLLSDLVFNHTEHSKLIKSCKMAIEGNPNAVVYVFFTH 196


>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 332

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 310 GHASAHGQRTRQILRQG 360
           GH  AH   TR +LR+G
Sbjct: 283 GHVMAHASATRLLLRKG 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,686,992
Number of Sequences: 5004
Number of extensions: 31855
Number of successful extensions: 78
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)