Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13d05
         (408 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-3|CAD88217.1|  685|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z32681-2|CAA83607.1|  687|Caenorhabditis elegans Hypothetical pr...    28   3.0  
AF173373-1|AAD51973.1|  687|Caenorhabditis elegans transmembrane...    28   3.0  
AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical...    27   3.9  
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z81581-13|CAE17944.1|  166|Caenorhabditis elegans Hypothetical p...    27   5.2  
Z81143-8|CAE18064.1|  166|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ...    27   5.2  
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei...    27   5.2  
AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein.      27   5.2  
Z70207-4|CAA94133.1|  337|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z66511-1|CAA91314.1|  537|Caenorhabditis elegans Hypothetical pr...    26   9.1  
U12964-4|AAA91219.3|  447|Caenorhabditis elegans Temporarily ass...    26   9.1  
AF000263-13|AAO21393.1|  695|Caenorhabditis elegans Hypothetical...    26   9.1  
AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical...    26   9.1  
AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical...    26   9.1  
AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical ...    26   9.1  
AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical ...    26   9.1  

>Z32681-3|CAD88217.1|  685|Caenorhabditis elegans Hypothetical
           protein F56F3.2b protein.
          Length = 685

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
 Frame = +2

Query: 53  GLVSGYENSRPININLRSITPSLNGTRGAYVISCIRAP-RLYRDLFTYNKYTAPLGFVVT 229
           G+ SG   + P++I L    PS         +S I  P  L  +  + N+++    FV  
Sbjct: 165 GVESGCPQTDPLSIILGVCFPSACSVADLTTVSSIYLPYNLKVECESQNRWS----FVTV 220

Query: 230 RTQAELQVWHILSVRKTFEAKSTRSVTGMLAHTDNGPDKF 349
                L VW +     TF+  S  S+    +  DN    F
Sbjct: 221 LLLIILMVWIVPQAVATFQTSSNDSILSCFSIPDNAKRTF 260


>Z32681-2|CAA83607.1|  687|Caenorhabditis elegans Hypothetical
           protein F56F3.2a protein.
          Length = 687

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
 Frame = +2

Query: 53  GLVSGYENSRPININLRSITPSLNGTRGAYVISCIRAP-RLYRDLFTYNKYTAPLGFVVT 229
           G+ SG   + P++I L    PS         +S I  P  L  +  + N+++    FV  
Sbjct: 165 GVESGCPQTDPLSIILGVCFPSACSVADLTTVSSIYLPYNLKVECESQNRWS----FVTV 220

Query: 230 RTQAELQVWHILSVRKTFEAKSTRSVTGMLAHTDNGPDKF 349
                L VW +     TF+  S  S+    +  DN    F
Sbjct: 221 LLLIILMVWIVPQAVATFQTSSNDSILSCFSIPDNAKRTF 260


>AF173373-1|AAD51973.1|  687|Caenorhabditis elegans transmembrane
           protein NDG-4 protein.
          Length = 687

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 1/100 (1%)
 Frame = +2

Query: 53  GLVSGYENSRPININLRSITPSLNGTRGAYVISCIRAP-RLYRDLFTYNKYTAPLGFVVT 229
           G+ SG   + P++I L    PS         +S I  P  L  +  + N+++    FV  
Sbjct: 165 GVESGCPQTDPLSIILGVCFPSACSVADLTTVSSIYLPYNLKVECESQNRWS----FVTV 220

Query: 230 RTQAELQVWHILSVRKTFEAKSTRSVTGMLAHTDNGPDKF 349
                L VW +     TF+  S  S+    +  DN    F
Sbjct: 221 LLLIILMVWIVPQAVATFQTSSNDSILSCFSIPDNAKRTF 260


>AL117203-10|CAB60424.2|  855|Caenorhabditis elegans Hypothetical
           protein Y48C3A.14 protein.
          Length = 855

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 11  YRTSADIQWLMQKHGLVSGYENSRPININ 97
           Y T A++  LM+KHG+  G + S P++IN
Sbjct: 493 YLTEAELITLMEKHGI--GTDASIPVHIN 519


>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
            W02B9.1b protein.
          Length = 2920

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 162  ARMQLITYAPRVPFKDGVIDLRLIFI 85
            A+   I Y+PR+ F + V D+ L+FI
Sbjct: 2536 AQGAFIEYSPRIAFPEQVSDIELLFI 2561


>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
            W02B9.1b protein.
          Length = 2920

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 162  ARMQLITYAPRVPFKDGVIDLRLIFI 85
            A+   I Y+PR+ F + V D+ L+FI
Sbjct: 2536 AQGAFIEYSPRIAFPEQVSDIELLFI 2561


>Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical
           protein W02B9.1a protein.
          Length = 1223

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 162 ARMQLITYAPRVPFKDGVIDLRLIFI 85
           A+   I Y+PR+ F + V D+ L+FI
Sbjct: 839 AQGAFIEYSPRIAFPEQVSDIELLFI 864


>Z81581-13|CAE17944.1|  166|Caenorhabditis elegans Hypothetical
           protein T02E1.8 protein.
          Length = 166

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +1

Query: 142 RDQLHSRAAPLSRFIYIQQVHCAVGICGNAHTSRAASVAHFVCA 273
           RD  H R   ++ F+ +    C +G C N+   R   +   V A
Sbjct: 116 RDDSHDRKESVASFVEVCSTSCPIGECVNSSNLRGGIIFPVVFA 159


>Z81143-8|CAE18064.1|  166|Caenorhabditis elegans Hypothetical
           protein T02E1.8 protein.
          Length = 166

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +1

Query: 142 RDQLHSRAAPLSRFIYIQQVHCAVGICGNAHTSRAASVAHFVCA 273
           RD  H R   ++ F+ +    C +G C N+   R   +   V A
Sbjct: 116 RDDSHDRKESVASFVEVCSTSCPIGECVNSSNLRGGIIFPVVFA 159


>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
            protein W02B9.1b protein.
          Length = 2920

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 162  ARMQLITYAPRVPFKDGVIDLRLIFI 85
            A+   I Y+PR+ F + V D+ L+FI
Sbjct: 2536 AQGAFIEYSPRIAFPEQVSDIELLFI 2561


>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
            protein.
          Length = 2920

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 162  ARMQLITYAPRVPFKDGVIDLRLIFI 85
            A+   I Y+PR+ F + V D+ L+FI
Sbjct: 2536 AQGAFIEYSPRIAFPEQVSDIELLFI 2561


>AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein.
          Length = 1223

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 162 ARMQLITYAPRVPFKDGVIDLRLIFI 85
           A+   I Y+PR+ F + V D+ L+FI
Sbjct: 839 AQGAFIEYSPRIAFPEQVSDIELLFI 864


>Z70207-4|CAA94133.1|  337|Caenorhabditis elegans Hypothetical
           protein F15A2.4 protein.
          Length = 337

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 206 APLGFVVTRTQAELQVWHILSVRKTFEA 289
           +P GFV T     L ++++L  R+TF+A
Sbjct: 287 SPYGFVYTIFDPLLTIYYVLPYRRTFKA 314


>Z66511-1|CAA91314.1|  537|Caenorhabditis elegans Hypothetical
           protein F07A11.1 protein.
          Length = 537

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 178 SIKARRANAADHVRSSCPVQGRCYRPQINIYRPTVFVSAHQTVFLH 41
           SI     +   H  +SC    RC RP     + T+FV+  +T+  H
Sbjct: 488 SISGAALDGVAHATTSCRRCARCARPMER--KTTLFVNRGETILPH 531


>U12964-4|AAA91219.3|  447|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 340 protein.
          Length = 447

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 293 STRSVTG-MLAHTDNGPDKFYAKDLMIMSGNVS 388
           +T+ + G M+AH DN  D +Y+     M G +S
Sbjct: 310 NTQVIEGKMIAHLDNATDLYYSVSAPAMRGYIS 342


>AF000263-13|AAO21393.1|  695|Caenorhabditis elegans Hypothetical
           protein T08B2.5g protein.
          Length = 695

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 262 FVCAQNL*SQKHKVRYGHASAHGQRTRQILRQGFND 369
           FV    L +   K+R+G  ++H ++TRQ L   ++D
Sbjct: 659 FVQGAGLGAAGSKMRHGAEASHKEKTRQALYSRYHD 694


>AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical
           protein T08B2.5f protein.
          Length = 838

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 262 FVCAQNL*SQKHKVRYGHASAHGQRTRQILRQGFND 369
           FV    L +   K+R+G  ++H ++TRQ L   ++D
Sbjct: 802 FVQGAGLGAAGSKMRHGAEASHKEKTRQALYSRYHD 837


>AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical
           protein T08B2.5c protein.
          Length = 866

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 262 FVCAQNL*SQKHKVRYGHASAHGQRTRQILRQGFND 369
           FV    L +   K+R+G  ++H ++TRQ L   ++D
Sbjct: 830 FVQGAGLGAAGSKMRHGAEASHKEKTRQALYSRYHD 865


>AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical
           protein T08B2.5a protein.
          Length = 924

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 262 FVCAQNL*SQKHKVRYGHASAHGQRTRQILRQGFND 369
           FV    L +   K+R+G  ++H ++TRQ L   ++D
Sbjct: 888 FVQGAGLGAAGSKMRHGAEASHKEKTRQALYSRYHD 923


>AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical
           protein T08B2.5b protein.
          Length = 925

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 262 FVCAQNL*SQKHKVRYGHASAHGQRTRQILRQGFND 369
           FV    L +   K+R+G  ++H ++TRQ L   ++D
Sbjct: 889 FVQGAGLGAAGSKMRHGAEASHKEKTRQALYSRYHD 924


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,689,863
Number of Sequences: 27780
Number of extensions: 191620
Number of successful extensions: 433
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)