Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13d05
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.3  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   4.1  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +3

Query: 195 TSTLRRWDLW*RAHKQSCKCGTFCLCAKPLKPK 293
           T  + RW  W     + CK  T    ++ ++PK
Sbjct: 382 TDKIIRWCTWSEGDLEKCKALTRAAYSRDVRPK 414


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +3

Query: 195 TSTLRRWDLW*RAHKQSCKCGTFCLCAKPLKPK 293
           T  + RW  W     + CK  T    ++ ++PK
Sbjct: 382 TDKIIRWCTWSEGDLEKCKALTRAAYSRDVRPK 414


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +3

Query: 195 TSTLRRWDLW*RAHKQSCKCGTFCLCAKPLKPK 293
           T  + RW  W     + CK  T    ++ ++PK
Sbjct: 382 TDKIIRWCTWSEGDLEKCKALTRAAYSRDVRPK 414


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +2

Query: 248 QVWHILSVRKTFEAKSTRSVTGMLAHTDNGPDKF 349
           Q WH L V  T E  +  +V G     +   D F
Sbjct: 154 QTWHDLRVALTSELTAASTVLGFFPALNIVADSF 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,839
Number of Sequences: 438
Number of extensions: 1968
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)