Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13d03
         (794 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   1.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   1.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   1.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   1.2  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    24   1.6  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    24   1.6  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    23   3.7  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   4.9  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 151 KQILFLKLILVEYFMKRAGTIFFYFPFCFLISLCSSNFSHILEV-YSRILH 2
           +++ ++  ++  +++ + G++F     CF  S     FSH L V ++  LH
Sbjct: 127 ERVAWMWCLIFAFWVPQLGSLFRSSRMCFFKSSKKPAFSHFLIVFFTETLH 177


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 151 KQILFLKLILVEYFMKRAGTIFFYFPFCFLISLCSSNFSHILEV-YSRILH 2
           +++ ++  ++  +++ + G++F     CF  S     FSH L V ++  LH
Sbjct: 127 ERVAWMWCLIFAFWVPQLGSLFRSSRMCFFKSSKKPAFSHFLIVFFTETLH 177


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 151 KQILFLKLILVEYFMKRAGTIFFYFPFCFLISLCSSNFSHILEV-YSRILH 2
           +++ ++  ++  +++ + G++F     CF  S     FSH L V ++  LH
Sbjct: 127 ERVAWMWCLIFAFWVPQLGSLFRSSRMCFFKSSKKPAFSHFLIVFFTETLH 177


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -2

Query: 151 KQILFLKLILVEYFMKRAGTIFFYFPFCFLISLCSSNFSHILEV-YSRILH 2
           +++ ++  ++  +++ + G++F     CF  S     FSH L V ++  LH
Sbjct: 127 ERVAWMWCLIFAFWVPQLGSLFRSSRMCFFKSSKKPAFSHFLIVFFTETLH 177


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 389 DSYMIHILLAWPIGSFV*IYKHNNELQFTAHS 294
           D Y++  L+   +G F+ I   N ++ F +H+
Sbjct: 100 DQYLLEQLVCEQLGGFLLILTPNGKIVFVSHT 131


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 115 YFMKRAGTIFFYFPFCFLISLCSSNF 38
           +F K+   IF Y P+  +  LC + F
Sbjct: 182 FFKKQFHYIFTYMPYNIVFGLCLTTF 207


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -1

Query: 776 YTHLMISVFNKIFFLY 729
           Y  +++S FN +F++Y
Sbjct: 38  YPRIVVSTFNIVFYMY 53


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 491 YLLNLI*EQNILACRAACLTSECSRFTIL 405
           YL+  I E   LA   +C ++ C RF I+
Sbjct: 243 YLIWTIYEMYHLAILWSCTSTNCPRFLIM 271


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,997
Number of Sequences: 336
Number of extensions: 3782
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)