Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13d03
         (794 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77658-3|CAB01159.1|  112|Caenorhabditis elegans Hypothetical pr...    28   6.7  
Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>Z77658-3|CAB01159.1|  112|Caenorhabditis elegans Hypothetical
           protein F14D7.3 protein.
          Length = 112

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = -1

Query: 572 CFLPYN-DHCH*FY--ATLLRN*INLAKYCYLLNLI*EQNILACRAAC 438
           CFL Y   + H FY     + +  N  ++  L NLI  QN  AC A C
Sbjct: 42  CFLIYQISYGHNFYEATACMPSSCNEEEFLNLYNLISNQNFTACSAIC 89


>Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical
           protein W01D2.4 protein.
          Length = 353

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 239 WVTLNLSCALLAIYICAELKKTLLVEMIKQTNFILKINFSRVLY 108
           W+  +L+C LLAI  CAE+ +   +E + + +    + F  + Y
Sbjct: 120 WMAGSLACILLAIERCAEINQQFPLEFLFRKSVFPVVAFLLLSY 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,906,947
Number of Sequences: 27780
Number of extensions: 348713
Number of successful extensions: 716
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)