Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13d02
         (757 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    25   0.65 
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    23   2.6  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    23   2.6  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    23   2.6  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   4.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   6.1  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 320 PVMKAGMEIVTGIRVGPPSL 261
           P  + G+++VTG+ V PP L
Sbjct: 436 PTAQMGLDMVTGLDVKPPGL 455


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -3

Query: 746 VDELVSYVALVAGAAPKLPVLYYHIPSMTRVEINM 642
           VDE +SY+ L++ A+  L +L     S+ +++ N+
Sbjct: 283 VDEEISYIVLMSFASDLLFILIQLFNSLRQMKNNL 317


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -3

Query: 746 VDELVSYVALVAGAAPKLPVLYYHIPSMTRVEINM 642
           VDE +SY+ L++ A+  L +L     S+ +++ N+
Sbjct: 283 VDEEISYIVLMSFASDLLFILIQLFNSLRQMKNNL 317


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -3

Query: 746 VDELVSYVALVAGAAPKLPVLYYHIPSMTRVEINM 642
           VDE +SY+ L++ A+  L +L     S+ +++ N+
Sbjct: 283 VDEEISYIVLMSFASDLLFILIQLFNSLRQMKNNL 317


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -2

Query: 615 ENTQFRRHQVHFERFERSVSSASCHVREE 529
           +  Q R+H ++  R + ++ S  C ++E+
Sbjct: 56  DEAQARKHTLNCHRMKPALFSVLCEIKEK 84


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 464 IGTSFNLFPKIAHAILSAVQNKDVDTARAL 375
           IG S  L  K+ HA+ S+VQN   D  + L
Sbjct: 13  IGDSL-LTLKLTHALSSSVQNFPSDAIKIL 41


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,868
Number of Sequences: 336
Number of extensions: 4179
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)